View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1037_low_7 (Length: 311)
Name: NF1037_low_7
Description: NF1037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1037_low_7 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 35 - 309
Target Start/End: Complemental strand, 8547 - 8262
Alignment:
| Q |
35 |
ataatcaaagtatgtccacttttttaataaatgacagagcttaattttggtttagtcagcataaaaaatgggcattccgtacatggtttcaactctttct |
134 |
Q |
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| T |
8547 |
ataatcaaagtttgcccatttttttaataaatgacagagcttaattttggtttagtcaacataaaaaacgggcattccgtacatggtttcaactctttct |
8448 |
T |
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| Q |
135 |
acgtcgtgtaagaaaagactaattctannnnnnnnn----ccataagaaaaatgacagttttatacttttcgccacttacaaag---acttacacaaatt |
227 |
Q |
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| T |
8447 |
acgtcgtgtaagaaaagactaattcaattttattttttttccataagaaaaatgacagttttatacttttcgccacttacaaagttaacttacacaaatt |
8348 |
T |
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| Q |
228 |
taattactatattcctcttgcgtcaagacggcaca----tacagttctttccatttttattagtaaagaacgatagtgtggtaaac |
309 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8347 |
taattattatattcctcttgcgtcaagacggcacaatgatacagttctttccatttttattagtaatgaacgatagtgtggtaaac |
8262 |
T |
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