View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10380_high_14 (Length: 246)

Name: NF10380_high_14
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10380_high_14
NF10380_high_14
[»] chr3 (9 HSPs)
chr3 (8-152)||(28916836-28916977)
chr3 (58-148)||(28902437-28902527)
chr3 (8-148)||(28926072-28926212)
chr3 (50-116)||(28892515-28892581)
chr3 (215-246)||(28902330-28902361)
chr3 (215-246)||(28916742-28916773)
chr3 (215-244)||(28892378-28892407)
chr3 (218-246)||(28935573-28935601)
chr3 (68-124)||(28935692-28935748)
[»] chr5 (1 HSPs)
chr5 (8-107)||(34009511-34009610)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 28916977 - 28916836
Alignment:
Q  8 gacatcattaaaaatggaaacatcaagcttgacttggaaccgtatgaaagaggtgagggggaagatgataccggtgaatctgatgcaagtgactttatag 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  28916977 gacatcattaaaaatggaaacatcaagcgtgacttggaaccgtatgaaagaggtgagggggaagat---accggtgaatctgatgcaagtgactttatag 28916881  T
Q  108 gttctgattctgacgacttggttggcacgtcaagagttaaaccag 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28916880 gttctgattctgacgacttggttggcacgtcaagagttaaaccag 28916836  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 28902527 - 28902437
Alignment:
Q  58 aggtgagggggaagatgataccggtgaatctgatgcaagtgactttataggttctgattctgacgacttggttggcacgtcaagagttaaa 148  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  28902527 aggtgagggggaagacgatactggtgaatctgatgcgagtgactttataggttctgattgtgatgacttggttggcacgtcaagagttaaa 28902437  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 28926212 - 28926072
Alignment:
Q  8 gacatcattaaaaatggaaacatcaagcttgacttggaaccgtatgaaagaggtgagggggaagatgataccggtgaatctgatgcaagtgactttatag 107  Q
    |||||| |||||||||| || | ||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||| |||||||  ||  |||||||||    
T  28926212 gacatcgttaaaaatgggaaaaacaagcgtgacttggatccgtatgaaataggtgagggggaagatgatactggtgattctgatgtgagcaactttatag 28926113  T
Q  108 gttctgattctgacgacttggttggcacgtcaagagttaaa 148  Q
    | ||||||| ||||||||| | ||  |||||||||||||||    
T  28926112 gatctgattgtgacgacttcgatgaaacgtcaagagttaaa 28926072  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 28892581 - 28892515
Alignment:
Q  50 tatgaaagaggtgagggggaagatgataccggtgaatctgatgcaagtgactttataggttctgatt 116  Q
    ||||||| ||||||||||||||||||||||||||| |||||||  ||| |||| |||| ||||||||    
T  28892581 tatgaaataggtgagggggaagatgataccggtgagtctgatgtcagtaacttcatagattctgatt 28892515  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 28902361 - 28902330
Alignment:
Q  215 gattttgttggatggggttcaagaagtctcat 246  Q
    ||||||||||||||||||||||||||||||||    
T  28902361 gattttgttggatggggttcaagaagtctcat 28902330  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 28916773 - 28916742
Alignment:
Q  215 gattttgttggatggggttcaagaagtctcat 246  Q
    ||||||||||||||||||||||||||||||||    
T  28916773 gattttgttggatggggttcaagaagtctcat 28916742  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 28892407 - 28892378
Alignment:
Q  215 gattttgttggatggggttcaagaagtctc 244  Q
    ||||||||||||||||||||||||||||||    
T  28892407 gattttgttggatggggttcaagaagtctc 28892378  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 28935601 - 28935573
Alignment:
Q  218 tttgttggatggggttcaagaagtctcat 246  Q
    |||||||||||||||||||||||||||||    
T  28935601 tttgttggatggggttcaagaagtctcat 28935573  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 28935748 - 28935692
Alignment:
Q  68 gaagatgataccggtgaatctgatgcaagtgactttataggttctgattctgacgac 124  Q
    ||||||||| | ||||| |||||||  ||| |||||||||||||||||| |||||||    
T  28935748 gaagatgatgctggtgactctgatgtgagttactttataggttctgattgtgacgac 28935692  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 34009610 - 34009511
Alignment:
Q  8 gacatcattaaaaatggaaacatcaagcttgacttggaaccgtatgaaagaggtgagggggaagatgataccggtgaatctgatgcaagtgactttatag 107  Q
    ||||||||||| ||| |||| | ||||  ||||||||| || ||||||  ||||||||||||||||||||| |||||||||||||  |||||||||||||    
T  34009610 gacatcattaacaattgaaaaaacaagtgtgacttggatccatatgaagtaggtgagggggaagatgatactggtgaatctgatgtgagtgactttatag 34009511  T

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