View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10380_high_16 (Length: 243)
Name: NF10380_high_16
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10380_high_16 |
 | |
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| [»] chr5 (3 HSPs) |
| |
|
| [»] chr3 (7 HSPs) |
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|
| [»] chr6 (4 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0045 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 33807892 - 33808119
Alignment:
| Q |
16 |
cacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807892 |
cacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgta |
33807991 |
T |
|
| Q |
116 |
tctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33807992 |
tctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggt |
33808091 |
T |
|
| Q |
216 |
ttttccttactcacattgagaaggtttt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33808092 |
ttttccttactcacattgagaaggtttt |
33808119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 33811546 - 33811773
Alignment:
| Q |
16 |
cacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811546 |
cacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgta |
33811645 |
T |
|
| Q |
116 |
tctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33811646 |
tctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggt |
33811745 |
T |
|
| Q |
216 |
ttttccttactcacattgagaaggtttt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33811746 |
ttttccttactcacattgagaaggtttt |
33811773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 33816464 - 33816691
Alignment:
| Q |
16 |
cacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816464 |
cacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgta |
33816563 |
T |
|
| Q |
116 |
tctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33816564 |
tctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggt |
33816663 |
T |
|
| Q |
216 |
ttttccttactcacattgagaaggtttt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33816664 |
ttttccttactcacattgagaaggtttt |
33816691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 50603085 - 50603307
Alignment:
| Q |
21 |
cacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgt--gagagttgtatct |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50603085 |
cacaatcctcactcacacagagttgagagaaaaatagaaagttcctcataagagtg--agagaaaaatatagtgagccaatttgtatgagagttgtatct |
50603182 |
T |
|
| Q |
119 |
acaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttt |
218 |
Q |
| |
|
||||||||||||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
50603183 |
acaaattgagatatatagttaggtccatctaaaggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggttccgtggtttt |
50603282 |
T |
|
| Q |
219 |
tccttactcacattgagaaggtttt |
243 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
50603283 |
ttcttactcacattgagaaggtttt |
50603307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 39298736 - 39298895
Alignment:
| Q |
89 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
182 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| | ||| ||||| ||||||| ||||||||| | |||||||||| |||| |||||| |
|
|
| T |
39298736 |
atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata |
39298834 |
T |
|
| Q |
183 |
gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtttt |
243 |
Q |
| |
|
||||| |||||||||| | |||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
39298835 |
gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttt |
39298895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 187
Target Start/End: Complemental strand, 31725448 - 31725346
Alignment:
| Q |
83 |
aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattata |
182 |
Q |
| |
|
||||||||||| | |||||||||||| |||| |||||||||||||||||| || |||||||||| || |||||||||||||||| ||||||| ||||| |
|
|
| T |
31725448 |
aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttata |
31725351 |
T |
|
| Q |
183 |
gtgga |
187 |
Q |
| |
|
|||| |
|
|
| T |
31725350 |
ttgga |
31725346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 54967477 - 54967314
Alignment:
| Q |
89 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
182 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
54967477 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
54967378 |
T |
|
| Q |
183 |
gtgga--gatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggtttt |
243 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||| |||| |||| |||||||||||||| |
|
|
| T |
54967377 |
gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggtttt |
54967314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 44782733 - 44782628
Alignment:
| Q |
142 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgg-agatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa |
237 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| |||||||||| || ||||||||| | |||||||||||||||| |||| |||| |||||||| |
|
|
| T |
44782733 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa |
44782634 |
T |
|
| Q |
238 |
ggtttt |
243 |
Q |
| |
|
|||||| |
|
|
| T |
44782633 |
ggtttt |
44782628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 54980051 - 54979946
Alignment:
| Q |
142 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga--gatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaa |
237 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| |||||||||| | |||||||||||||||| |||| |||| |||||||| |
|
|
| T |
54980051 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa |
54979952 |
T |
|
| Q |
238 |
ggtttt |
243 |
Q |
| |
|
|||||| |
|
|
| T |
54979951 |
ggtttt |
54979946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 18556511 - 18556407
Alignment:
| Q |
142 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaag |
238 |
Q |
| |
|
||||||| ||||||||| | |||||||| |||| | ||||||||||| ||||||||||| |||||||||||||||| |||| |||| ||||||||| |
|
|
| T |
18556511 |
tccacctaagggtgaagttgttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaag |
18556412 |
T |
|
| Q |
239 |
gtttt |
243 |
Q |
| |
|
||||| |
|
|
| T |
18556411 |
gtttt |
18556407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 31152226 - 31152022
Alignment:
| Q |
40 |
gagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagtta |
139 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
31152226 |
gagttgagagaaaaatagagagttcctcgtaagagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagtta |
31152127 |
T |
|
| Q |
140 |
ggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggt-ttttccttactcacattgagaag |
238 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
31152126 |
ggtccatctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaag |
31152027 |
T |
|
| Q |
239 |
gtttt |
243 |
Q |
| |
|
||||| |
|
|
| T |
31152026 |
gtttt |
31152022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 243
Target Start/End: Complemental strand, 1111564 - 1111398
Alignment:
| Q |
80 |
gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattatta |
177 |
Q |
| |
|
|||||||||||| || ||||||||||||| | |||||| ||||||||||||||||||||||| || | |||||||| ||||||||| |||||||| |
|
|
| T |
1111564 |
gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattatta |
1111465 |
T |
|
| Q |
178 |
tta-tagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtttt |
243 |
Q |
| |
|
||| || | ||||||||||| |||| | ||||| || |||||||||| | ||||| |||||||||| |
|
|
| T |
1111464 |
ttattatagtagatttaagagacttatgagtcccatgatttttccttatttacattcagaaggtttt |
1111398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 22981504 - 22981608
Alignment:
| Q |
142 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgg-agatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaag |
238 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| |||||||||| || |||||||||| | |||||||||||||||| |||| |||||||||||||| |
|
|
| T |
22981504 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag |
22981603 |
T |
|
| Q |
239 |
gtttt |
243 |
Q |
| |
|
||||| |
|
|
| T |
22981604 |
gtttt |
22981608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 23806904 - 23806800
Alignment:
| Q |
142 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgg-agatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaag |
238 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| |||||||||| || |||||||||| | |||||||||||||||| |||| |||||||||||||| |
|
|
| T |
23806904 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag |
23806805 |
T |
|
| Q |
239 |
gtttt |
243 |
Q |
| |
|
||||| |
|
|
| T |
23806804 |
gtttt |
23806800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 29707069 - 29706950
Alignment:
| Q |
124 |
ttgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttcctt |
223 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||||||| || | |||||||| || |||||| |
|
|
| T |
29707069 |
ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt |
29706970 |
T |
|
| Q |
224 |
actcacattgagaaggtttt |
243 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
29706969 |
actcatattgagaaggtttt |
29706950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 212
Target Start/End: Complemental strand, 8252853 - 8252716
Alignment:
| Q |
79 |
agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagataca----tagttaggtccacctgagggtgaagatttgtattcccatta |
174 |
Q |
| |
|
|||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| || ||| ||||| || | | ||||| ||||||||||| ||| |
|
|
| T |
8252853 |
agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacataattaattaagtccatctaaagatgaagctttgtattcccgtta |
8252754 |
T |
|
| Q |
175 |
ttattatagtggagatttaagaggcttacgggtcccgt |
212 |
Q |
| |
|
|||||| | || || ||||||| |||||| ||||||| |
|
|
| T |
8252753 |
ttattacattgaggagttaagagacttacgagtcccgt |
8252716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 25857395 - 25857233
Alignment:
| Q |
89 |
atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgagggtgaagat-ttgtattcccattattattata |
182 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||| || ||| || ||||||| | ||||||| | ||||||||||||||| |||||| |
|
|
| T |
25857395 |
atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata |
25857296 |
T |
|
| Q |
183 |
gtgg-agatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggtttt |
243 |
Q |
| |
|
|||| || |||||||||| | |||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
25857295 |
gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggtttt |
25857233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 4835840 - 4835677
Alignment:
| Q |
89 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
182 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||| ||||||||||| |||||| |
|
|
| T |
4835840 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata |
4835741 |
T |
|
| Q |
183 |
gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggtttt |
243 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
4835740 |
gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggtttt |
4835677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 13465165 - 13465061
Alignment:
| Q |
142 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaag |
238 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | |||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
13465165 |
tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag |
13465066 |
T |
|
| Q |
239 |
gtttt |
243 |
Q |
| |
|
||||| |
|
|
| T |
13465065 |
gtttt |
13465061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 4842857 - 4842752
Alignment:
| Q |
142 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa |
237 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||||| ||||||||||| | |||||||||| | |||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
4842857 |
tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa |
4842758 |
T |
|
| Q |
238 |
ggtttt |
243 |
Q |
| |
|
|||||| |
|
|
| T |
4842757 |
ggtttt |
4842752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 17845847 - 17845947
Alignment:
| Q |
144 |
cacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttt |
242 |
Q |
| |
|
||||| ||||||||| | ||||||| ||||||| ||||||||||| ||||||||| | ||||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
17845847 |
cacctaagggtgaagttgttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttt |
17845946 |
T |
|
| Q |
243 |
t |
243 |
Q |
| |
|
| |
|
|
| T |
17845947 |
t |
17845947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 24379487 - 24379383
Alignment:
| Q |
142 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag |
238 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||||| ||||||||||| | |||||||||| | | ||||||||||||||| || |||||||||||||| |
|
|
| T |
24379487 |
tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag |
24379388 |
T |
|
| Q |
239 |
gtttt |
243 |
Q |
| |
|
||||| |
|
|
| T |
24379387 |
gtttt |
24379383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 27341120 - 27341038
Alignment:
| Q |
161 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtttt |
243 |
Q |
| |
|
||||||| ||||||| ||| |||| || ||||||||| | |||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
27341120 |
ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggtttt |
27341038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 2727 - 2832
Alignment:
| Q |
142 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgg-agatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa |
237 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| |||||||||| || |||||||||| | |||||||||||||||| |||| ||||||||||||| |
|
|
| T |
2727 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa |
2826 |
T |
|
| Q |
238 |
ggtttt |
243 |
Q |
| |
|
|||||| |
|
|
| T |
2827 |
ggtttt |
2832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 37287069 - 37286987
Alignment:
| Q |
161 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtttt |
243 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| ||||| |||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
37287069 |
ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggtttt |
37286987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 42683038 - 42682937
Alignment:
| Q |
144 |
cacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtt |
241 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||| | |||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
42683038 |
cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggtt |
42682939 |
T |
|
| Q |
242 |
tt |
243 |
Q |
| |
|
|| |
|
|
| T |
42682938 |
tt |
42682937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 9757480 - 9757316
Alignment:
| Q |
89 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
182 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
9757480 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
9757381 |
T |
|
| Q |
183 |
gtgga---gatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggtttt |
243 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
9757380 |
gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggtttt |
9757316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 41481548 - 41481711
Alignment:
| Q |
89 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
182 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
41481548 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
41481647 |
T |
|
| Q |
183 |
gtgg-agatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggtttt |
243 |
Q |
| |
|
|||| || |||||||||| | |||||||||||||||| |||| |||| |||||||||||||| |
|
|
| T |
41481648 |
gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggtttt |
41481711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 36167547 - 36167709
Alignment:
| Q |
89 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
182 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
36167547 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
36167646 |
T |
|
| Q |
183 |
gtgg-agatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggtttt |
243 |
Q |
| |
|
|||| || |||||||||| | |||| ||||||||||| |||| |||| |||||||||||||| |
|
|
| T |
36167647 |
gtggaagttttaagaggcccaagggt-ccgtggttttttccctttctcatattgagaaggtttt |
36167709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 18951326 - 18951224
Alignment:
| Q |
145 |
acctgagggtgaagat-ttgtattcccattattattatagtgg-agatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggt |
240 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||| |||||||||| || ||||||| || | |||| |||||||||| |||| |||||||||||||||| |
|
|
| T |
18951326 |
acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt |
18951227 |
T |
|
| Q |
241 |
ttt |
243 |
Q |
| |
|
||| |
|
|
| T |
18951226 |
ttt |
18951224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 26752 - 26592
Alignment:
| Q |
89 |
atagtgagccaatttgtgagagttgtatctacaaattgagataca-----tagttaggtccacctgagggtgaag-atttgtattcccattattattata |
182 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | | |||| || ||||||| |||||| || | |||||||| | |||| |||| | |
|
|
| T |
26752 |
atagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagttgtattctcgttatcattaga |
26653 |
T |
|
| Q |
183 |
gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtttt |
243 |
Q |
| |
|
||||| |||||||||| | ||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
26652 |
gtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggtttt |
26592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 37037942 - 37038024
Alignment:
| Q |
161 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtttt |
243 |
Q |
| |
|
|||||||| |||||| |||||||| | |||||||||| | |||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
37037942 |
ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggtttt |
37038024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 342404 - 342319
Alignment:
| Q |
161 |
ttgtattcccattattattatagtgg-agatttaagaggcttacgggtcccgtggttt-ttcc-ttactcacattgagaaggtttt |
243 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||||||| | || ||||||||||| |||| || |||| |||||||||||||| |
|
|
| T |
342404 |
ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttt |
342319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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