View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10380_high_2 (Length: 562)
Name: NF10380_high_2
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10380_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 109 - 476
Target Start/End: Original strand, 40212733 - 40213102
Alignment:
| Q |
109 |
ggtagagttttctaggagggaatcctatgaaattgttgctcctaacttagtagatggacacatatatggccattctttaaaattgtgatgaagagaagaa |
208 |
Q |
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| T |
40212733 |
ggtagagttttctaggagggaatcctatgaaattgttgctcctaacttagtagatggacacatgtatggccattctttaaaattgtgatgaagagatgaa |
40212832 |
T |
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| Q |
209 |
gccaccaattgtattgctttgattattagtgaaattgcataacttttttccattaagaatagtcttcgaattatgatgctccactcaggnnnnnnnnnnc |
308 |
Q |
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| T |
40212833 |
gccaccaattgtattgctttgattattagtgaaattgcataacttttttccattaagaatagtcttcgaattatgatgctccactcaggaaaaaaaaaac |
40212932 |
T |
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| Q |
309 |
tagtatttgaattatgctcaaaagtcaaaacgaaactactatttataaatttacactagtaatttataatgaattcgaattcgaccttctctaattgtga |
408 |
Q |
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| T |
40212933 |
tagtatttgaattatgctcaaaagtcaaaacaaaactactatttataaatttacactagtaatttataatgaattcgaattcgaccttctctaattgtga |
40213032 |
T |
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| Q |
409 |
tacaattttatagcatcaagtaagtctattattttcatt--acacagctacgattggacggtatggtgag |
476 |
Q |
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| T |
40213033 |
tacaattttttagcatcaagtaagtctattattttcattacacacagctaggattggacggtatggtgag |
40213102 |
T |
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