View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10380_high_8 (Length: 291)

Name: NF10380_high_8
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10380_high_8
NF10380_high_8
[»] chr3 (10 HSPs)
chr3 (9-278)||(1186147-1186419)
chr3 (9-241)||(1204251-1204483)
chr3 (9-241)||(1304607-1304839)
chr3 (93-202)||(480946-481055)
chr3 (93-202)||(778181-778290)
chr3 (93-202)||(476034-476143)
chr3 (111-195)||(5361030-5361114)
chr3 (142-195)||(45870515-45870568)
chr3 (141-195)||(2996508-2996562)
chr3 (140-188)||(20977366-20977414)
[»] scaffold0438 (1 HSPs)
scaffold0438 (96-232)||(5282-5418)
[»] chr5 (2 HSPs)
chr5 (96-181)||(33958061-33958146)
chr5 (117-206)||(28091058-28091147)
[»] chr2 (4 HSPs)
chr2 (111-195)||(43864051-43864135)
chr2 (96-195)||(43875203-43875302)
chr2 (117-195)||(43867548-43867626)
chr2 (105-202)||(38989109-38989206)
[»] chr4 (1 HSPs)
chr4 (93-190)||(52186834-52186931)
[»] chr7 (3 HSPs)
chr7 (118-195)||(6889148-6889225)
chr7 (117-195)||(32413626-32413704)
chr7 (118-161)||(6844163-6844206)
[»] chr6 (7 HSPs)
chr6 (117-195)||(7115544-7115622)
chr6 (117-195)||(7120616-7120694)
chr6 (117-195)||(7124020-7124098)
chr6 (131-195)||(7140748-7140812)
chr6 (131-195)||(8680362-8680426)
chr6 (117-195)||(7175432-7175510)
chr6 (117-195)||(8656649-8656727)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 1186419 - 1186147
Alignment:
Q  9 atggacatcagttgagtgatcgcgaagagacagcaacatagatatgaaccgttcaaaactttggtcggtactaaatggattaacacttaatgtgagagtg 108  Q
    ||||| ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||  || ||||||||  ||| |||||||||||| ||||||    
T  1186419 atggatatcagttgagtgatcacgaagagacaacaacatagatatgaactgttcaaaactttcttccgtactaaaatgatcaacacttaatgtaagagtg 1186320  T
Q  109 gaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgatggagaagatggt 208  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1186319 gaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgatggagaagattgt 1186220  T
Q  209 cgctcaattcactgatcctgtcttcttcaatttcgatgtcgtccctacgctgctgct---tcttactttgcct 278  Q
    ||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||   |||||||||||||    
T  1186219 cgctcaattcactcatcctgtcttcttcaatttcaatgtcttccctacgctgctgctgcctcttactttgcct 1186147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 1204483 - 1204251
Alignment:
Q  9 atggacatcagttgagtgatcgcgaagagacagcaacatagatatgaaccgttcaaaactttggtcggtactaaatggattaacacttaatgtgagagtg 108  Q
    ||||| ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||  || ||||||||  ||| |||||||||||| ||||||    
T  1204483 atggatatcagttgagtgatcacgaagagacaacaacatagatatgaactgttcaaaactttcttccgtactaaaatgatcaacacttaatgtaagagtg 1204384  T
Q  109 gaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgatggagaagatggt 208  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1204383 gaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgatggagaagattgt 1204284  T
Q  209 cgctcaattcactgatcctgtcttcttcaattt 241  Q
    ||||||||||||| |||||||||||||||||||    
T  1204283 cgctcaattcactcatcctgtcttcttcaattt 1204251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 1304607 - 1304839
Alignment:
Q  9 atggacatcagttgagtgatcgcgaagagacagcaacatagatatgaaccgttcaaaactttggtcggtactaaatggattaacacttaatgtgagagtg 108  Q
    ||||| ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||  || ||||||||  ||| |||||||||||| ||||||    
T  1304607 atggatatcagttgagtgatcacgaagagacaacaacatagatatgaactgttcaaaactttcttccgtactaaaatgatcaacacttaatgtaagagtg 1304706  T
Q  109 gaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgatggagaagatggt 208  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1304707 gaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgattgagaagatggt 1304806  T
Q  209 cgctcaattcactgatcctgtcttcttcaattt 241  Q
    ||||||||||||| |||||||||||||||||||    
T  1304807 cgctcaattcactcatcctgtcttcttcaattt 1304839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 481055 - 480946
Alignment:
Q  93 acttaatgtgagagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatg 192  Q
    |||||| || || |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||    
T  481055 acttaaggtaagcgtgggaagagtcttccagagattgatccatcttttggataaaatacaagtttgaacggcctctttggcgtttaaaaaggagagtatg 480956  T
Q  193 tgatggagaa 202  Q
     |||||||||    
T  480955 agatggagaa 480946  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 778181 - 778290
Alignment:
Q  93 acttaatgtgagagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatg 192  Q
    ||||||||| |||||||  ||| | |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| || ||||||    
T  778181 acttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttggactgcctctttggctttcaaaaaagatagtatg 778280  T
Q  193 tgatggagaa 202  Q
    ||| ||||||    
T  778281 tgaaggagaa 778290  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 476143 - 476034
Alignment:
Q  93 acttaatgtgagagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatg 192  Q
    ||||| ||| || |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| || |||||||||||| ||    
T  476143 acttagtgtaagggtgggaagagtattccagagattgatccatcttttggataaaatacaagtttgaacggcttctttggcgtttaaaaaggagagtgtg 476044  T
Q  193 tgatggagaa 202  Q
    ||| ||||||    
T  476043 tgaaggagaa 476034  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 5361030 - 5361114
Alignment:
Q  111 aagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |  || | |||| | || ||||||||||| ||||||    
T  5361030 aagagtcttccagagattggtccatcttttggataaaatgcaagtttggatggcttttttgacgtttaaaaaggagagcatgtga 5361114  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 45870515 - 45870568
Alignment:
Q  142 gataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    ||||||| ||||||||||||||| |||||||||||| |||| || |||||||||    
T  45870515 gataaaacgcaagtttgaactgcgtctttggcattcgaaaacgacagtatgtga 45870568  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 2996508 - 2996562
Alignment:
Q  141 ggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    |||||||||||||||||||||||| ||||| |  |||||||| || |||||||||    
T  2996508 ggataaaatgcaagtttgaactgcatcttttgtgttcaaaaatgaaagtatgtga 2996562  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 20977414 - 20977366
Alignment:
Q  140 tggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagag 188  Q
    |||||||||||||||||||||| || | || |||||| |||||||||||    
T  20977414 tggataaaatgcaagtttgaacggcgttttgggcatttaaaaaggagag 20977366  T

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Target: scaffold0438 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 232
Target Start/End: Complemental strand, 5418 - 5282
Alignment:
Q  96 taatgtgagagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | |  ||||||||||| |||||||||    
T  5418 taatgtaagagtgggaagagtcttccagagattgatccatcttttggataaaatgcatgtttgaacggcctctcttgtgttcaaaaaggacagtatgtga 5319  T
Q  196 tggagaagatggtcgctcaattcactgatcctgtctt 232  Q
      |||||||  ||||  |||| |||||||||||||||    
T  5318 atgagaagacagtcggccaatacactgatcctgtctt 5282  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 33958061 - 33958146
Alignment:
Q  96 taatgtgagagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaa 181  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||  |||||||    
T  33958061 taatgtaagagtgtgaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaacggcctctctggtgttcaaaa 33958146  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 28091147 - 28091058
Alignment:
Q  117 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgatggagaagatg 206  Q
    |||||||||||||    |||||||||| | ||||||||||||||| || | |||||||  |||||||||||| || ||| ||| ||||||    
T  28091147 cttccagagattgtcgaatcttttggagagaatgcaagtttgaacggcttgtttggcaaacaaaaaggagagaatttgaaggataagatg 28091058  T

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Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 43864051 - 43864135
Alignment:
Q  111 aagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    |||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||| |||||||||    
T  43864051 aagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggacagtatgtga 43864135  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 43875203 - 43875302
Alignment:
Q  96 taatgtgagagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    |||||| ||||||| |||| ||||||| |||||||||||||||||||| |||||||||||||||||  ||||||| ||||| |||||||| | |||||||    
T  43875203 taatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacgacctcttttgcatttaaaaaggacactatgtga 43875302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 43867548 - 43867626
Alignment:
Q  117 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    |||||||||| |||||||||||||||| ||||||||||||||| | |||||||| || ||||||||||| |||| ||||    
T  43867548 cttccagagagtgatccatcttttggacaaaatgcaagtttgagcggcctcttttgcgttcaaaaaggacagtacgtga 43867626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 38989206 - 38989109
Alignment:
Q  105 agtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgatggagaa 202  Q
    |||||||||| ||||||||||| |||||||||||||||| |||| ||| |||||||| |||| | | || || | |||||| ||||||||| ||||||    
T  38989206 agtggaaagactcttccagagaatgatccatcttttggacaaaacgcatgtttgaacagcctgtattgcgtttagaaaggacagtatgtgaaggagaa 38989109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 52186931 - 52186834
Alignment:
Q  93 acttaatgtgagagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagta 190  Q
    ||||| ||| ||||||| |||| || |||||||| |||||||||||||||| |||||||| |||||||| |||| ||| || |||| |||||||||||    
T  52186931 acttagtgtaagagtgggaagactcctccagagaatgatccatcttttggacaaaatgcaggtttgaacggcctgttttgcgttcagaaaggagagta 52186834  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 6889225 - 6889148
Alignment:
Q  118 ttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| || ||| |||  | |||||| ||||||||||||    
T  6889225 ttccagagattgttccatcttttggatagaatgcaagtttgaacagcgtctatggtgtccaaaaaagagagtatgtga 6889148  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 32413704 - 32413626
Alignment:
Q  117 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    ||||||||||||  |||||||| |||| ||||||||||||||||| || | |||||  |||||| ||||||||||||||    
T  32413704 cttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtga 32413626  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 6844206 - 6844163
Alignment:
Q  118 ttccagagattgatccatcttttggataaaatgcaagtttgaac 161  Q
    ||||| |||||| ||||||||||||||| |||||||||||||||    
T  6844206 ttccaaagattgttccatcttttggatagaatgcaagtttgaac 6844163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 7115544 - 7115622
Alignment:
Q  117 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    ||||||||||||  ||||||||||||| ||||  |||||||||||||| | |||||  |||||||| ||||||||||||    
T  7115544 cttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtga 7115622  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 7120616 - 7120694
Alignment:
Q  117 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    ||||||||||||  ||||||||||||| ||||  |||||||||||||| | |||||  |||||||| ||||||||||||    
T  7120616 cttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtga 7120694  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 7124020 - 7124098
Alignment:
Q  117 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    ||||||||||||  ||||||||||||| ||||  |||||||||||||| | |||||  |||||||| ||||||||||||    
T  7124020 cttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtga 7124098  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 7140748 - 7140812
Alignment:
Q  131 tccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    ||||||||||||| ||||| |||||||||||||| | ||| | ||||||||| ||||||||||||    
T  7140748 tccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtga 7140812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 8680362 - 8680426
Alignment:
Q  131 tccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    ||||||||||||| ||||| |||||||||||||| | ||| | ||||||||| ||||||||||||    
T  8680362 tccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtga 8680426  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 7175432 - 7175510
Alignment:
Q  117 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    ||||||||||||  |||||||  ||||||||||||||||||||||||| |  ||||  || || |||||||||||||||    
T  7175432 cttccagagattcttccatctagtggataaaatgcaagtttgaactgcgtgcttggtttttaacaaggagagtatgtga 7175510  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 8656649 - 8656727
Alignment:
Q  117 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 195  Q
    ||||||||||||  ||||||||||||  ||||  |||||||||||||| | |||||  |||||||| ||||||||||||    
T  8656649 cttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtga 8656727  T

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