View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10380_low_1 (Length: 808)
Name: NF10380_low_1
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10380_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 711; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 15 - 792
Target Start/End: Original strand, 29677110 - 29677888
Alignment:
| Q |
15 |
caaaggtatagggcagtagataatattattaatttttaatcggaaaaatttattaagccaagaatgtgcaagaaatacaaaaacttggatcacagaggaa |
114 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
29677110 |
caaaggtatagggcagtagataatattatttttttttaatcggaaaaatttattaagccaagaatgtgcaagaaatacaaaaacttagatcgcagaggaa |
29677209 |
T |
|
| Q |
115 |
catacaaagtgccgtatatatgcggaacacctgaaaccagacacatccgtatacaaaaagaacctccaacccataacaataaactcccaaaaactaaaga |
214 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
29677210 |
catacaaggtgccgtatatatgcggaacacctgaaatcagacacatccgtatacaaaaggaacctctaacccataacaataaacacccaaaaactaaaga |
29677309 |
T |
|
| Q |
215 |
taattcaatccccaaagcctaccaaaacctgatgttgctgcccactctaaaatagtgaaccgaacgcaacagaaccaacaaaaacaaccatgctatccta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29677310 |
taattcaatccccaaagcctaccaaaacctgatgttgctgcccactctaaaatagtgaaccgtacgcaacagaaccaacaaaaacaaccatgctatccta |
29677409 |
T |
|
| Q |
315 |
aagaagaaagataaaagtgaaccaacagaactctaacaacctcacacctgttagcgcaaaacaggtgaccaaaaaaccagcacctatagccatacaaaga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29677410 |
aagaagaaagataaaagtgaaccaacagaactctaacaacctcacacctgttagcgcaaaacaggtgaccaaaaaaccagcacctatagccatacaaaga |
29677509 |
T |
|
| Q |
415 |
caatggataa-cccccaaaataacctcattcggatctaaaatcgggtcggagtttgggtcgggttgtatcatgatcgggattgtacccgctttttgaaac |
513 |
Q |
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| T |
29677510 |
caatggataaccccccaaaataacctcattcggatctaaagtcgggtcggagtttgggtcgggttgcatcatgatcggggttgtacccgctttttgaaac |
29677609 |
T |
|
| Q |
514 |
ccggtatccaccaactccaacccatgacccggttcatcctcaatctcctgtgaagacgtgccaggtgtcaccccctccaagtgacccacctatagcacgt |
613 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29677610 |
ccggtatccaccaactccaacccatgacccgcttcatccccaatctcctgtgaagacgtgccaggtgtcaccccctccaagtgacccacctatagcacgt |
29677709 |
T |
|
| Q |
614 |
gatcaatctcttttctcatcatgtgactggattgctccccttctccaaacagaacatcattatcttcactgccaccttttacctctacagcttgtacttt |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29677710 |
gatcaatctcttttctcatcatgtgactggattgctccccttctccaaacagaacatcattatcttcactgccaccttttacctctacagcttgtacttt |
29677809 |
T |
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| Q |
714 |
tcctaaagtttccttttgttctcaattgactctcccacctcccttggttccttgtacagctttgttgtaacgaaaaact |
792 |
Q |
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| T |
29677810 |
tcctaaagtttccttttgttctcaattgactctcccacctcccttggttccttgtacagctttgttgtaacgaaaaact |
29677888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 5757201 - 5757116
Alignment:
| Q |
59 |
aaaatttattaagccaagaatgtgcaagaaatacaaaaacttggatcacagaggaacatacaaagtgccgtatatatgcggaacacct |
146 |
Q |
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|||||||||||||||||| ||||| |||||| |||||| || ||||||| || | |||||| |||||||||||||||||||||||| |
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| T |
5757201 |
aaaatttattaagccaagtatgtgtaagaaacacaaaa-ctgtgatcaca-agataaatacaaggtgccgtatatatgcggaacacct |
5757116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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