View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10380_low_10 (Length: 298)
Name: NF10380_low_10
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10380_low_10 |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 41425919 - 41426188
Alignment:
| Q |
17 |
gtttcagttctaatcttaattatatggatttgcatattattttctgagtagaatccaaagagttgggctnnnnnnntccaggaagagtggaagattttgg |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || |||||||||||||||||||| |
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| T |
41425919 |
gtttcagctctaatcttaattatatggatttgcatattattttctgagcaaaatccaaagagttgggctaaaaaaa-ccgggaagagtggaagattttgg |
41426017 |
T |
|
| Q |
117 |
agaagcacttgccgggtgagtttagcattcttgttactaaattgcttgaaaatttttccatgtcatatcacatatcacatttagtatcaattttcctttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41426018 |
agaagcacttgccgggtgagtttagcattcttgttactaaattgcttgaaattttttccatgtaatatcacatatcacatttagtatcaattttcctttt |
41426117 |
T |
|
| Q |
217 |
tcgagctgatggactttaacctatagggtatatccaatcattgttaagtttttctatcaaactttgttcat |
287 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41426118 |
tcgagctgatggactttaacgtatagggtatatccaatcattgttaagtttttctatcaaattttgttcat |
41426188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 99 - 287
Target Start/End: Original strand, 41453249 - 41453437
Alignment:
| Q |
99 |
aagagtggaagattttggagaagcacttgccgggtgagtttagcattcttgttactaaattgcttgaaaatttttccatgtcatatcacatatcacattt |
198 |
Q |
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||||||||||||||||| | ||||| ||||| ||||||||| | |||||| |||||||| ||||| || ||||| ||||||||||||||||||| || |
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| T |
41453249 |
aagagtggaagattttgaaaaagcatttgccaggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcacatatcacgatt |
41453348 |
T |
|
| Q |
199 |
agtatcaattttcctttttcgagctgatggactttaacctatagggtatatccaatcattgttaagtttttctatcaaactttgttcat |
287 |
Q |
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| T |
41453349 |
agtattcaatttacttttttgaggttatggacttcaccatatgggttgtatccaatcattgttaatttttttaaacaaacttcgttcat |
41453437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 279
Target Start/End: Original strand, 41441976 - 41442165
Alignment:
| Q |
93 |
tccaggaagagtggaagattttggagaagcacttgccgggtgagtttagcattcttgttactaaattgcttgaaaatttttccatgtcatat--cacata |
190 |
Q |
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||||||||||||||| |||| |||||||||| ||||||||||||||||| |||| || || |||| ||||| || | ||| ||||||||| | |||| |
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| T |
41441976 |
tccaggaagagtggaggattctggagaagcatttgccgggtgagtttagtattcgtgacacaaaatagcttgtaatatcttcaatgtcatatgactcata |
41442075 |
T |
|
| Q |
191 |
tcacatttagta-tcaattttcctttttcgagctgatggactttaacctatagggtatatccaatcattgttaagttttt-ctatcaaact |
279 |
Q |
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|||||||||| | || |||| || ||||||||| |||||||||| ||| || | ||| ||||||||||| | ||||| |||||||||| |
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| T |
41442076 |
tcacatttagaattcgatttacc-ttttcgagccaatggactttactatatgggttgtattcaatcattgtttattttttcctatcaaact |
41442165 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 41431387 - 41431490
Alignment:
| Q |
61 |
tgagtagaatccaaagagttgggctnnnnnnntccaggaagagtggaagattttggagaagcacttgccgggtgagtttagcattcttgttactaaattg |
160 |
Q |
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|||| |||||||||||||||||||| |||||||| ||||||| || |||||| |||| ||||| || |||||||| |||| || |||||||| | |
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| T |
41431387 |
tgagcagaatccaaagagttgggctaaaaaggtccaggaacagtggaaaatgttggaggagcatttgccaggcgagtttagtattcctgatactaaatag |
41431486 |
T |
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| Q |
161 |
cttg |
164 |
Q |
| |
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|||| |
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| T |
41431487 |
cttg |
41431490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 5408 - 5671
Alignment:
| Q |
17 |
gtttcagttctaatcttaattatatggatttgcatattattttctgagtagaatccaaagagttgggctnnnnnnntccaggaagagtggaagattttgg |
116 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5408 |
gtttgagttctaatcttaattatatggatttgcatattattttctgagtagaatccaaagagttgggctaaaaaaatccaggaagagtggaagattttgg |
5507 |
T |
|
| Q |
117 |
agaagcacttgccgggtgagtttagcattcttgttactaaattgcttgaaaatttttccatgtcatatcacatatcacatttagtatcaattttcctttt |
216 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5508 |
agaatcacgtgccgggtgagtttagcattcttgttactaaattgcttgaaattttttccatgt-------catatcacatttagtatcaattttcctttt |
5600 |
T |
|
| Q |
217 |
tcgagctgatggactttaacctatagggtatatccaatcattgttaagtttttctatcaaactttgttcat |
287 |
Q |
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||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5601 |
tcgagctgatggaatttaacgtatagggtatatccaatcattgttaagtttttctatcaaactttgttcat |
5671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 18050 - 17787
Alignment:
| Q |
17 |
gtttcagttctaatcttaattatatggatttgcatattattttctgagtagaatccaaagagttgggctnnnnnnntccaggaagagtggaagattttgg |
116 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18050 |
gtttgagttctaatcttaattatatggatttgcatattattttctgagtagaatccaaagagttgggctaaaaaaatccaggaagagtggaagattttgg |
17951 |
T |
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| Q |
117 |
agaagcacttgccgggtgagtttagcattcttgttactaaattgcttgaaaatttttccatgtcatatcacatatcacatttagtatcaattttcctttt |
216 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17950 |
agaatcacgtgccgggtgagtttagcattcttgttactaaattgcttgaaattttttccatgtcatatc-------acatttagtatcaattttcctttt |
17858 |
T |
|
| Q |
217 |
tcgagctgatggactttaacctatagggtatatccaatcattgttaagtttttctatcaaactttgttcat |
287 |
Q |
| |
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||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17857 |
tcgagctgatggaatttaacgtatagggtatatccaatcattgttaagtttttctatcaaactttgttcat |
17787 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 33369587 - 33369853
Alignment:
| Q |
17 |
gtttcagttctaatcttaattatatggatttgcatat---------tattttctgagtagaatccaaagagttgggctnnnnnnntccaggaagagtgga |
107 |
Q |
| |
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||||||||| |||||||||||||| |||||| ||||| ||||| |||| |||||||||||||||||||| ||||||||||||||| |
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| T |
33369587 |
gtttcagttttaatcttaattatacggatttacatatattattacctatttcctgatcagaatccaaagagttgggctaaaaaaatccaggaagagtgga |
33369686 |
T |
|
| Q |
108 |
agattttggagaagcacttgccgggtgagtttagcattcttgttactaaattgcttgaaaatttttccatgtcatatcacatatcacatttagtatcaat |
207 |
Q |
| |
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||||||||||| |||| || ||||| |||||||| ||||||||| |||||| ||||| || ||||||||| ||||| ||| |||||||||| |||| | |
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| T |
33369687 |
agattttggaggagcattttccgggcgagtttagtattcttgttgctaaatagcttgtaatattttccatgccatattacagatcacatttactatccaa |
33369786 |
T |
|
| Q |
208 |
tttcctttttcgagctgatggactttaacctatagggtatatccaatcattgttaagtttttctatc |
274 |
Q |
| |
|
||| |||||||||||||| |||||| | | ||| || | ||||||||| ||||||| |||||||||| |
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| T |
33369787 |
tttactttttcgagctgacggacttaaccatatgggttgtatccaatcgttgttaattttttctatc |
33369853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 33363161 - 33363351
Alignment:
| Q |
17 |
gtttcagttctaatcttaattatatggatttgcatatta----ttttctgagtagaatccaaagagttgggctnnnnnnntccaggaagagtggaagatt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||| || || ||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
33363161 |
gtttcagttctaatcttaattatatggatttatatattacctatttcctaagcagaatccgaagagttgggctaaaaaaatccaggaagagtggaggatt |
33363260 |
T |
|
| Q |
113 |
ttggagaagcacttgccgggtgagtttagcattcttgttactaaattgcttgaaaatttttccatgtcatatcacatatcacatttagtat |
203 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||| || |||||||| ||||| || ||||| ||||||||| | ||||||||||||||| |
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|
| T |
33363261 |
ttggaggagcatttgccgggtgagtttagtattcctgatactaaatagcttgtaatattttcaatgtcatattgcctatcacatttagtat |
33363351 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 7763490 - 7763275
Alignment:
| Q |
22 |
agttctaatcttaattatatggatttgcatat----tattttctgagtagaatccaaagagttgggctnnnnnnntccaggaagagtggaagattttgga |
117 |
Q |
| |
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|||||| ||||| ||||||||||||| | ||| ||||| ||||| |||||||||||| ||||||| ||||||||||||||| ||||||||| |
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|
| T |
7763490 |
agttctgatcttgattatatggatttacctataacctatttcctgagcagaatccaaagaattgggctaaaaaaatccaggaagagtggaggattttgga |
7763391 |
T |
|
| Q |
118 |
gaagcacttgccgggtgagtttagcattcttgttactaaattgcttgaaaatttttccatgtcatatcacatatcacatttagtatcaattttccttttt |
217 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||| ||| |||| |||| | ||||||||||||||||||| |||||| ||||||| | ||| |||||| |
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|
| T |
7763390 |
gaagcatttgccgggtgagtctagtattcttgatacgaaatatcttgtactattttccatgtcatatcacacatcacacgtagtatccaattttcttttt |
7763291 |
T |
|
| Q |
218 |
cgagctgatggacttta |
234 |
Q |
| |
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| ||||||||||||||| |
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|
| T |
7763290 |
c-agctgatggacttta |
7763275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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