View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10380_low_11 (Length: 297)
Name: NF10380_low_11
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10380_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 1899949 - 1900228
Alignment:
| Q |
1 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagcacaaggcaacattcacatgaaagcagttc |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1899949 |
acaaaaatctgtgcctatagagttggaaaagtgcgtcgaagctgtccaaaacaagacatctagaaacgagcacaaggcaacattcacatgaaagcagttc |
1900048 |
T |
|
| Q |
101 |
gtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatcagaataagagcatttatt |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1900049 |
gcccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatcagaaaaagagcatttatt |
1900148 |
T |
|
| Q |
201 |
aataacacattgatacaatacaaggttaaaattctgaactgaaataacattcaagttccttagttttgaaaaaatattcat |
281 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
1900149 |
aataacacatggatacaatacaaggttaaaattctgaactgaaataacattcaagtt-cggagttttgaaaaaatattcat |
1900228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 1909395 - 1909674
Alignment:
| Q |
1 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagcacaaggcaacattcacatgaaagcagttc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1909395 |
acaaaaatctgtgcctatagagttggaaaagtgcgtcgaagctgtccaaaacaagacatctagaaacgagcacaaggcaacattcacatgaaagcagttc |
1909494 |
T |
|
| Q |
101 |
gtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatcagaataagagcatttatt |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1909495 |
gcccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatcagaaaaagagcatttatt |
1909594 |
T |
|
| Q |
201 |
aataacacattgatacaatacaaggttaaaattctgaactgaaataacattcaagttccttagttttgaaaaaatattcat |
281 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
1909595 |
aataacacatggatacaatacaaggttaaaattctgaactgaaataacattcaagtt-cggagttttgaaaaaatattcat |
1909674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 1893032 - 1893316
Alignment:
| Q |
1 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagcacaaggcaacattcacatgaaagcagttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
1893032 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaaacaagacatctagaaacgagcacaaggcaacattcac-tgaaagcagttc |
1893130 |
T |
|
| Q |
101 |
gtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagaca--tatcag-aataagagcattt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||| | |
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| T |
1893131 |
gtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacaggtatatgaaaaaagagcatgt |
1893230 |
T |
|
| Q |
198 |
attaat---aacacattgatacaatacaaggttaaaattctgaactgaaataacattcaagttccttagttttgaaaaaatattca |
280 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
1893231 |
attaataacaacacatggatacaatacaaagttaaaattctgaactgaaattgcattcaagttccttagttttgaaaatatattca |
1893316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 2935363 - 2935082
Alignment:
| Q |
1 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagca-caaggcaacattcacatgaaagcagtt |
99 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| |
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| T |
2935363 |
acaaaaatttgtgcctacagagtgggaaaagtgcatcgaagctgtccaaagcaagacatctagaaacgagcaacaaggcgacattcacatgaaagcagtt |
2935264 |
T |
|
| Q |
100 |
cgtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagac--atatcag-aataagagcatt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | || || |||||||| |
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| T |
2935263 |
cgtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaat----cattgcactacaggaagacagatttaagaaaaaagagcatg |
2935168 |
T |
|
| Q |
197 |
tattaat--aacacattgatacaatacaaggttaaaattctgaactgaaataacattcaagttccttagttttgaaaaaatattca |
280 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
2935167 |
tattaatacaacacatggatacaatacaaagttaaaattctgaactgaaattgcattcaagttccttagttttgaaaatatattca |
2935082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 103 - 280
Target Start/End: Original strand, 1902579 - 1902762
Alignment:
| Q |
103 |
ccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagaca--tatcag-aataagagcatttat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||| ||| |
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|
| T |
1902579 |
ccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacaggtatatgaaaaaagagcatgtat |
1902678 |
T |
|
| Q |
200 |
taat---aacacattgatacaatacaaggttaaaattctgaactgaaataacattcaagttccttagttttgaaaaaatattca |
280 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
1902679 |
taataacaacacatggatacaatacaaagttaaaattctgaactgaaattgcattcaagttccttagttttgaaaatatattca |
1902762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 2930311 - 2930198
Alignment:
| Q |
1 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagc-acaaggcaacattcacatgaaagcagtt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
2930311 |
acaaaaatctgtgcctacagagttggaaacgtgcgtcgaagctgtccaaagcaagacatctagaaacgagcaacaaggcaacattcacatgaaagcagtt |
2930212 |
T |
|
| Q |
100 |
cgtccaccccttct |
113 |
Q |
| |
|
||||||||||||| |
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|
| T |
2930211 |
tgtccaccccttct |
2930198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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