View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10380_low_12 (Length: 297)
Name: NF10380_low_12
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10380_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 43294508 - 43294779
Alignment:
| Q |
11 |
gaacaataattagtgcaaaacaaaaagtaaaaagtagactcattccctccaaaccccaaattactaggtctattccgctacgaatcagagggttaccacc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43294508 |
gaacaataattagtgcaaaacaaaaagtaaaaagtagactcattccctccaaaccccaaattactaggtctattccgctacgaatcagagggttaccacc |
43294607 |
T |
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| Q |
111 |
aaaatgtttggtatagtaaacccaatatgctgactttccaacaaaagtaaaaatacaacaacccaaatgctaaattcctaattcta-tctacaggcacaa |
209 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43294608 |
aaaatgtatggtatagtaaacccaatatgctgactttccaacaaaagtaaaaatacaacaacccaaatgctaaattcctaattctattctacaggcacaa |
43294707 |
T |
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| Q |
210 |
tgtcccgcacttgctgcattgcatctactcctattctattttccttcttcatcattactgtacgcataaaat |
281 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43294708 |
tgtcccgcacttgccgcattgcatctactcctattctattttccttcttcatcattactgtacgcataaaat |
43294779 |
T |
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