View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10380_low_16 (Length: 276)
Name: NF10380_low_16
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10380_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 31082977 - 31083237
Alignment:
| Q |
15 |
acatcaactaacagcaccatacactccacaacagaatagtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaa |
114 |
Q |
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| T |
31082977 |
acatcaactaacagcaccatacactccacaacagaatggtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaa |
31083076 |
T |
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| Q |
115 |
ggtttgccaaagaaattttgggcagaggctgcaaatactgcagtttttctgctgaacagattgccaacaaaatctgtgcagaaaaagactccatttgaag |
214 |
Q |
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| T |
31083077 |
ggtttgccaaagaaattttgggcagaggctgcaaatactgcagtttttctgctgaacagattgccaacaaaagctgtgcagaaaaagactccatttgaag |
31083176 |
T |
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| Q |
215 |
cttggcataacagcaaaccaaagctaattaatctgaagacattcggctgcctatgcttctc |
275 |
Q |
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| T |
31083177 |
cttggcatagcagcaaaccaaagctaattaatctgaagacattcggctgcctatgtttctc |
31083237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 9308200 - 9308460
Alignment:
| Q |
15 |
acatcaactaacagcaccatacactccacaacagaatagtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9308200 |
acatcaactaacagcaccatacactccacaacagaatggtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaa |
9308299 |
T |
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| Q |
115 |
ggtttgccaaagaaattttgggcagaggctgcaaatactgcagtttttctgctgaacagattgccaacaaaatctgtgcagaaaaagactccatttgaag |
214 |
Q |
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| T |
9308300 |
ggtttgccaaagaaattttgggcagaggctacaaatactgcagtttttctgctgaacagattgtcaacaaaagctgtgcagaaaaagactccatttgaag |
9308399 |
T |
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| Q |
215 |
cttggcataacagcaaaccaaagctaattaatctgaagacattcggctgcctatgcttctc |
275 |
Q |
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| T |
9308400 |
cttggcatagcagcaaaccaaagctaattaatctgaagacattcggctgcctatgtttctc |
9308460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 32147757 - 32147827
Alignment:
| Q |
79 |
attatggagatggcaaggtgcttacttcatgataaaggtttgccaaagaaattttgggcagaggctgcaaa |
149 |
Q |
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||||||||||||| ||| ||||| || ||||| |||| ||| ||||| || || ||||||||||||||||| |
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| T |
32147757 |
attatggagatggaaagatgcttgctacatgaaaaagattttccaaaaaagttgtgggcagaggctgcaaa |
32147827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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