View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10380_low_17 (Length: 252)

Name: NF10380_low_17
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10380_low_17
NF10380_low_17
[»] chr1 (5 HSPs)
chr1 (1-249)||(13867872-13868120)
chr1 (142-249)||(33150830-33150937)
chr1 (4-249)||(26510417-26510662)
chr1 (1-41)||(45795267-45795307)
chr1 (5-66)||(5808740-5808801)
[»] chr7 (2 HSPs)
chr7 (4-249)||(35213468-35213713)
chr7 (1-249)||(26855548-26855796)
[»] chr4 (3 HSPs)
chr4 (1-249)||(43516787-43517035)
chr4 (1-249)||(20543920-20544168)
chr4 (11-47)||(38295784-38295820)
[»] chr3 (2 HSPs)
chr3 (1-238)||(40513763-40514000)
chr3 (1-249)||(34829254-34829502)
[»] chr2 (3 HSPs)
chr2 (1-249)||(11196186-11196434)
chr2 (1-221)||(32624217-32624437)
chr2 (166-221)||(144246-144301)
[»] chr5 (2 HSPs)
chr5 (2-249)||(21367976-21368223)
chr5 (207-249)||(979350-979392)
[»] chr6 (2 HSPs)
chr6 (1-221)||(14687065-14687285)
chr6 (13-64)||(26513744-26513795)
[»] chr8 (1 HSPs)
chr8 (193-249)||(25900869-25900925)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 13867872 - 13868120
Alignment:
1 caggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||    
13867872 caggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggtatcattgttggcgagg 13867971  T
101 cagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttg 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
13867972 cagcattgtgtgttactgggtgtggcatggcagagtctgtttctcatttatttctacattgtgctacttttggtactttatggcattttgtcaggtgttg 13868071  T
201 gattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 249  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||    
13868072 gattggaatgtcaggtgctgatccccttaatattgatgaccatttcatt 13868120  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 33150937 - 33150830
Alignment:
142 tctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtcc 241  Q
    |||||||||||||| || || || ||||||||  | ||||||||| || |||||| |||||| |||||||||||||| || |||||||||||||||| ||    
33150937 tctcatttatttattcactgcgccacttttggctcattgtggcatcttatcaggtcttggatcggaatgtcaggtgccgacccccttaatattgatgacc 33150838  T
242 atctcatt 249  Q
    || |||||    
33150837 atttcatt 33150830  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 249
Target Start/End: Original strand, 26510417 - 26510662
Alignment:
4 gtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcag 103  Q
    |||||||| ||||| ||||| ||||||||  | ||||| ||||| |||||||||||||||||| | ||| |  | |||||  | |||| |  ||| ||||    
26510417 gtgccgctgaaggtctccatctttgcttgacggttgttgcgggacaggttgccgactaagaataatcttatgagacgtggagtaatcaataccgaagcag 26510516  T
104 cattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggat 203  Q
       |||||||||| || || |||| ||  |||||||   |||| || ||||| |||||||| | ||| ||||| |||||||||  | |||||| ||||||    
26510517 ttatgtgtgttacaggatgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccattttcggtacattgtggcatcatatcaggtcttggat 26510616  T
204 tggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 249  Q
     ||||||||||||| ||| ||| ||||||| |||| |||| |||||    
26510617 cggaatgtcaggtgttgacccctttaatatcgatgaccatttcatt 26510662  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45795307 - 45795267
Alignment:
1 caggtgccgcttaaggtttccatttttgcttggagattgtt 41  Q
    ||||||||||||||||||||||||||||||||| |||||||    
45795307 caggtgccgcttaaggtttccatttttgcttggggattgtt 45795267  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 5808801 - 5808740
Alignment:
5 tgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaat 66  Q
    ||||||| |||||||| || ||||||||| | ||||| || || ||||||||||||||||||    
5808801 tgccgctaaaggtttctatctttgcttggcggttgttgcgagacaggttgccgactaagaat 5808740  T

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Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 35213713 - 35213468
Alignment:
4 gtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcag 103  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||    
35213713 gtgccgcttaaggtttccatttttgcttgaagattgttacgggataggttgccgactaagaatcaccttctccggcatggcatcattgttggcgaggcag 35213614  T
104 cattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggat 203  Q
    ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
35213613 cattgtgtgttactgggtgcggcatggcagagtctgtttcccatttatttatacattgtgctactttcgttactttgtggcattttgtcaggtgttggat 35213514  T
204 tggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 249  Q
    |||||||||||||| |||||||||||||||||||| |||| |||||    
35213513 tggaatgtcaggtgttgatccccttaatattgatgaccatttcatt 35213468  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 26855796 - 26855548
Alignment:
1 caggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgagg 100  Q
    ||||||||||| ||||||||||||||||||||| |||| || || ||||||||||||||||||||||| ||| |  |||||||||| ||||   ||||||    
26855796 caggtgccgctcaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttaggcgtggcataatcaacagcgagg 26855697  T
101 cagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttg 200  Q
    |     ||||||| || ||||| || ||||  ||| ||   |||||| | ||||| |||||  | ||||||||| ||||||||||| || |||||| ||     
26855696 cttgtatgtgtgtcacagggtgcggtatggaagagactacatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtcttt 26855597  T
201 gattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 249  Q
    ||| ||||||||||||||||| ||  |||||||| ||| |||| |||||    
26855596 gatcggaatgtcaggtgctgacccttttaatattaatgaccatttcatt 26855548  T

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Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 43516787 - 43517035
Alignment:
1 caggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| |||||||||    
43516787 caggtgccgcttaaggtttccatttttgcttggagattgttatgggataggttgccgactaagaatcatctcctccggcgtggcatcatcgttggcgagg 43516886  T
101 cagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttg 200  Q
     ||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
43516887 tagcattgtgtgttactgggtgcggcatgacatagtctgtttctcatttatttatacattgtgctactttcggtactttgtggcattttatcaggtgttg 43516986  T
201 gattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 249  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||    
43516987 gattggaatgtcaggtgctgatccccttaatattgatgaccatttcatt 43517035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 20544168 - 20543920
Alignment:
1 caggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgagg 100  Q
    ||||||||||| ||||||||||||||| ||||| |||| || || |||||||||||||||||||| || |||||  |||||||||| ||||  ||||||     
20544168 caggtgccgctgaaggtttccatttttacttggcgattattgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgaga 20544069  T
101 cagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttg 200  Q
    ||    ||||||| || ||||| || ||||  ||| ||   |||||||||||||| || || || ||||||||| | ||||||||| || |||||| |||    
20544068 caagtatgtgtgtcacagggtgcggtatggaagagactacatctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttg 20543969  T
201 gattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 249  Q
    ||| ||||||||||||||||| ||| |||||||||||| |||| |||||    
20543968 gatcggaatgtcaggtgctgacccctttaatattgatgaccatttcatt 20543920  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 38295820 - 38295784
Alignment:
11 ttaaggtttccatttttgcttggagattgttacggga 47  Q
    |||| |||||||||||||||||||| |||||||||||    
38295820 ttaaagtttccatttttgcttggaggttgttacggga 38295784  T

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Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 40513763 - 40514000
Alignment:
1 caggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | || ||||    
40513763 caggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttcttcggcgtggtatcatcgtcggtgagg 40513862  T
101 cagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttg 200  Q
    |||||||||||||| | |||||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||    
40513863 cagcattgtgtgtttccgggtgtggcatggcagagtctgtctctcatttatttctacattgtcctacttttggtactttatggcattttgtcaggtgttg 40513962  T
201 gattggaatgtcaggtgctgatccccttaatattgatg 238  Q
    ||||||||||||| ||||||||||||||||||||||||    
40513963 gattggaatgtcatgtgctgatccccttaatattgatg 40514000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 34829502 - 34829254
Alignment:
1 caggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgagg 100  Q
    ||||||| ||| ||||| ||||| ||||||||| | ||||| ||||| |||||| ||| ||||||| | |||||  | |||||  | |||| || ||| |    
34829502 caggtgctgctgaaggtctccatctttgcttggcggttgttgcgggacaggttgtcgattaagaataatcttctaagacgtggagtaatcaatgccgaag 34829403  T
101 cagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttg 200  Q
     ||   |||||||||| ||||| |||| ||  |||||||   |||| || ||||| |||||||| |||||  |||| |||||||||  | |||||| |||    
34829402 tagttatgtgtgttacagggtgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccactttcagtacattgtggcatcatatcaggtcttg 34829303  T
201 gattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 249  Q
    ||| ||||||||||||| | | ||| |||||||||||| |||| |||||    
34829302 gatcggaatgtcaggtgttaacccctttaatattgatgaccatttcatt 34829254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 11196434 - 11196186
Alignment:
1 caggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgagg 100  Q
    ||||||||||| ||||||||||||||| ||||| ||||||| || |||||||||||||||||||| || |||||  |||||||||| |||| ||||||||    
11196434 caggtgccgctgaaggtttccatttttacttggcgattgttgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaatggcgagg 11196335  T
101 cagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttg 200  Q
    |||   |||||||||| ||||| || ||||| |||  ||  |||||||||||||| || || || ||||||||| | ||||||||| || |||||| |||    
11196334 cagttatgtgtgttacagggtgcggtatggcagagattgcgtctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttg 11196235  T
201 gattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 249  Q
    |||  ||||||||||||  || | |||||||||||||| |||| |||||    
11196234 gatcagaatgtcaggtgtcgacctccttaatattgatgaccatttcatt 11196186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32624437 - 32624217
Alignment:
1 caggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgagg 100  Q
    ||||||||||| |||||||||||||||| |||| |||| ||  | |||||||||||||||||||| || |||||  |||||||||| ||||  |||||||    
32624437 caggtgccgctgaaggtttccatttttgtttggcgattattgagagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgagg 32624338  T
101 cagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttg 200  Q
    ||    ||||||| || || || || ||||  ||| ||   |||||||||||||| ||||| || ||||||||| | ||||||||| || |||||| |||    
32624337 catgtatgtgtgtcacaggatgcggtatggaagagactacatctcatttatttattcattgcgccacttttggttcattgtggcatcttatcaggtcttg 32624238  T
201 gattggaatgtcaggtgctga 221  Q
    |||||||||||||||||||||    
32624237 gattggaatgtcaggtgctga 32624217  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 144246 - 144301
Alignment:
166 acttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctga 221  Q
    ||||||||| ||||||||||| || |||||| |||||| |||||||||||||||||    
144246 acttttggttctttgtggcatcttatcaggtcttggatcggaatgtcaggtgctga 144301  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 249
Target Start/End: Original strand, 21367976 - 21368223
Alignment:
2 aggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggc 101  Q
    |||||||||| ||||||||||||||| ||||| |||| ||  | |||||||||||||||||||| || || ||  |||||||||| ||||  ||||||||    
21367976 aggtgccgctgaaggtttccattttttcttggcgattattgagagataggttgccgactaagaaccatctcctaaggcgtggcataatcaacggcgaggc 21368075  T
102 a-gcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttg 200  Q
    | | | | ||||| || ||||| || ||||  ||| ||   ||| || | ||||| ||||| || ||||||||| | ||||||||| || |||||| |||    
21368076 atgtaat-tgtgtcacagggtgcggtatggaagagactacatcttatctttttattcattgcgccacttttggttcattgtggcatcttatcaggtcttg 21368174  T
201 gattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 249  Q
    ||| ||||||||||||||||| || ||||||||||||| |||| |||||    
21368175 gatcggaatgtcaggtgctgaccctcttaatattgatgaccatttcatt 21368223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 979350 - 979392
Alignment:
207 aatgtcaggtgctgatccccttaatattgatgtccatctcatt 249  Q
    ||||||||||| |||||||||||||||||||| |||| |||||    
979350 aatgtcaggtggtgatccccttaatattgatgaccatttcatt 979392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14687065 - 14687285
Alignment:
1 caggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgagg 100  Q
    ||||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||| ||| |  |||||||||| ||||   | ||||    
14687065 caggtgccgcttaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttaggcgtggcataatcaacagtgagg 14687164  T
101 cagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttg 200  Q
          ||||||| || ||||| ||  |||  ||| ||   |||||| | ||||| |||||  | ||||||||| ||||||||||| || |||||| |||    
14687165 tttgtatgtgtgtcacagggtgcggtgtggaagagactacatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtcttg 14687264  T
201 gattggaatgtcaggtgctga 221  Q
    ||| |||||||||||||||||    
14687265 gatcggaatgtcaggtgctga 14687285  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 26513795 - 26513744
Alignment:
13 aaggtttccatttttgcttggagattgttacgggataggttgccgactaaga 64  Q
    |||||||||||||||||||||   ||||| ||||||||||||||||| ||||    
26513795 aaggtttccatttttgcttggcagttgttgcgggataggttgccgaccaaga 26513744  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 25900925 - 25900869
Alignment:
193 aggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 249  Q
    |||| |||||| ||||||||||||| ||| ||| |||||||||||| |||| |||||    
25900925 aggtcttggatcggaatgtcaggtgttgacccctttaatattgatgaccatttcatt 25900869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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