View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10380_low_19 (Length: 250)
Name: NF10380_low_19
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10380_low_19 |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 41453203 - 41453413
Alignment:
| Q |
1 |
cacttatttcctcagcaaaacccaagttgggctagaaagaaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41453203 |
cacttatttcctcagcaaaacccaagttgggctagaaa----aattcagaaagagtggaagattttgaaaaagcatttgccaggtgagtttggtattctt |
41453298 |
T |
|
| Q |
101 |
tatactaaatagcttgtaatattttcgatgtcatatcacatatcacgattagtattcaatttacttttttgaggttatggacttcaccatatgggttgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41453299 |
tatactaaatagcttgtaatattttcgatgtcatatcacatatcacgattagtattcaatttacttttttgaggttatggacttcaccatatgggttgta |
41453398 |
T |
|
| Q |
201 |
tccaatcattgttaa |
215 |
Q |
| |
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||||||||||||||| |
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| T |
41453399 |
tccaatcattgttaa |
41453413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 213
Target Start/End: Original strand, 41441971 - 41442146
Alignment:
| Q |
40 |
aaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatat--c |
137 |
Q |
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||||||||| ||||||||| |||| || | ||||||||||||||||||||| |||||| | | || |||||||||||||||| ||| ||||||||| | |
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| T |
41441971 |
aaaaatccaggaagagtggaggattctggagaagcatttgccgggtgagtttagtattcgtgacacaaaatagcttgtaatatcttcaatgtcatatgac |
41442070 |
T |
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| Q |
138 |
acatatcacgattagtattcaatttacttttttgaggttatggacttcaccatatgggttgtatccaatcattgtt |
213 |
Q |
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| T |
41442071 |
tcatatcacatttagaattcgatttaccttttcgagccaatggactttactatatgggttgtattcaatcattgtt |
41442146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 41426000 - 41426164
Alignment:
| Q |
51 |
aagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcacatatcacgatt |
150 |
Q |
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||||||||||||||||| | ||||| ||||||||||||||| | |||||| |||||||| ||||| ||| ||||| |||| |||||||||||||| || |
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| T |
41426000 |
aagagtggaagattttggagaagcacttgccgggtgagtttagcattcttgttactaaattgcttgaaattttttccatgtaatatcacatatcacattt |
41426099 |
T |
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| Q |
151 |
agtattcaatttacttttttgaggttatggacttcaccatatgggttgtatccaatcattgttaa |
215 |
Q |
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| T |
41426100 |
agtatcaattttcctttttcgagctgatggactttaacgtatagggtatatccaatcattgttaa |
41426164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 41431446 - 41431496
Alignment:
| Q |
72 |
agcatttgccgggtgagtttggtattctttatactaaatagcttgtaatat |
122 |
Q |
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| T |
41431446 |
agcatttgccaggcgagtttagtattcctgatactaaatagcttgtaatat |
41431496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 33369667 - 33369842
Alignment:
| Q |
40 |
aaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcac |
139 |
Q |
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||||||||| ||||||||||||||||| | ||||||| ||||| |||||| |||||||| | |||||||||||||||||||||| ||| ||||| || |
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| T |
33369667 |
aaaaatccaggaagagtggaagattttggaggagcattttccgggcgagtttagtattcttgttgctaaatagcttgtaatattttccatgccatattac |
33369766 |
T |
|
| Q |
140 |
atatcacgattagtattcaatttacttttttgaggttatggacttcaccatatgggttgtatccaatcattgttaa |
215 |
Q |
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| T |
33369767 |
agatcacatttactatccaatttactttttcgagctgacggacttaaccatatgggttgtatccaatcgttgttaa |
33369842 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 33363236 - 33363364
Alignment:
| Q |
40 |
aaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcac |
139 |
Q |
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||||||||| ||||||||| ||||||| | |||||||||||||||||||| |||||| | ||||||||||||||||||||||||| ||||||||| | |
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| T |
33363236 |
aaaaatccaggaagagtggaggattttggaggagcatttgccgggtgagtttagtattcctgatactaaatagcttgtaatattttcaatgtcatattgc |
33363335 |
T |
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| Q |
140 |
atatcacgattagtattcaatttactttt |
168 |
Q |
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|||||| ||||||||||||||| |||| |
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| T |
33363336 |
ctatcacatttagtattcaatttaatttt |
33363364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 207
Target Start/End: Complemental strand, 7763420 - 7763254
Alignment:
| Q |
40 |
aaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcac |
139 |
Q |
| |
|
||||||||| ||||||||| ||||||| | ||||||||||||||||||| | |||||||| |||| ||||| |||||| ||||||| |||||||||||| |
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| T |
7763420 |
aaaaatccaggaagagtggaggattttggagaagcatttgccgggtgagtctagtattcttgatacgaaatatcttgtactattttccatgtcatatcac |
7763321 |
T |
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| Q |
140 |
atatcacgattagtattcaatttacttttttgaggttatggacttcaccatatgggttgtatccaatc |
207 |
Q |
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| T |
7763320 |
acatcacacgtagtatccaattttc-tttttcagctgatggactttaccatatgggttgcatccaatc |
7763254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 5479 - 5580
Alignment:
| Q |
40 |
aaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcac |
139 |
Q |
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||||||||| ||||||||||||||||| | || || |||||||||||||| | |||||| |||||||| ||||| ||| ||||| |||||||||||| |
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| T |
5479 |
aaaaatccaggaagagtggaagattttggagaatcacgtgccgggtgagtttagcattcttgttactaaattgcttgaaattttttccatgtcatatcac |
5578 |
T |
|
| Q |
140 |
at |
141 |
Q |
| |
|
|| |
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|
| T |
5579 |
at |
5580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 17979 - 17878
Alignment:
| Q |
40 |
aaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcac |
139 |
Q |
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||||||||| ||||||||||||||||| | || || |||||||||||||| | |||||| |||||||| ||||| ||| ||||| |||||||||||| |
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| T |
17979 |
aaaaatccaggaagagtggaagattttggagaatcacgtgccgggtgagtttagcattcttgttactaaattgcttgaaattttttccatgtcatatcac |
17880 |
T |
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| Q |
140 |
at |
141 |
Q |
| |
|
|| |
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|
| T |
17879 |
at |
17878 |
T |
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