View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10380_low_20 (Length: 250)
Name: NF10380_low_20
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10380_low_20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 27579927 - 27579689
Alignment:
| Q |
12 |
aagaaatagtatgtcgaatgagatgatattaactatttgtgaaggaaaccataaggatccttattgtaaatctttatcatattctctctccctccctctc |
111 |
Q |
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| T |
27579927 |
aagaaatagtatgtcgaatgagatgatattaactatttgtgaaggaaaccataaggatccttattgtaaatctttatcatattctctctccctccctctc |
27579828 |
T |
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| Q |
112 |
ttttccttgttcattaattctcaagtattccataatgattttatgaacttttttgcttaattgtaacttaactaaatagagaatttaattagtgttagaa |
211 |
Q |
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| T |
27579827 |
ttttccttgttcattaattctcaagtattccataatgattttatgaactttttttcttaattgtaacttaactaaatagagaatttaattagtgttagaa |
27579728 |
T |
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| Q |
212 |
catcaatctggttcaaagaaaaccaaacacagaaacaca |
250 |
Q |
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| T |
27579727 |
catcaatctggttcaaagaaaaccaaacacagaaacaca |
27579689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 27723505 - 27723399
Alignment:
| Q |
118 |
ttgttcattaattctcaagtattccataatgattttatgaacttttttgcttaattgtaacttaactaaatagagaatttaattagtgttagaacatcaa |
217 |
Q |
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| T |
27723505 |
ttgttctttaattcttaagtattccacaatggttttatgaccattttttcttaat-----cttaac-aaatagagaatttatttagtgttaaaacatcaa |
27723412 |
T |
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| Q |
218 |
tctggttcaaaga |
230 |
Q |
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| T |
27723411 |
tctggttcaaaga |
27723399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 14681196 - 14681100
Alignment:
| Q |
125 |
ttaattctcaagtattccataatgattttatgaacttttttgcttaattgtaacttaactaaatagagaatttaattagtgttagaacatcaatctggtt |
224 |
Q |
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| T |
14681196 |
ttaattcttaagtattctacaatggttttatgaccttttttgcttaat-----cttaactag-tagagaatttaattagtgttagaacataaatctggtt |
14681103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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