View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10380_low_21 (Length: 249)
Name: NF10380_low_21
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10380_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 32300760 - 32300524
Alignment:
| Q |
1 |
cttgtactaaaatagacagaattttaggtaaattctcattatgccccctatatgctcaaagccccaaaaaatacactaccggaagcgtgcttccataaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32300760 |
cttgtactaaaatagacagaattttaggtaaattctcattatgccccctatatgctcaaagccccaaaaaatacactaccggaagcgtgcttccataaaa |
32300661 |
T |
|
| Q |
101 |
agaccacacttaagggggacgagatgaaaaattacccaattttaatggtttctaccgtaaaatcaaa--catacgcttaccctatcaagtttgttggtca |
198 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32300660 |
aagccacactttagggggacgagatgaaaaattacccaattttaatggtttctaccgtaaaatcaaacgcatacgcttaccctatcaagtttgttggtca |
32300561 |
T |
|
| Q |
199 |
ggttgttagtttcagcactctgatttgacagttcctc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32300560 |
ggttgttagtttcagcactctgatttgacagttcctc |
32300524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 32700457 - 32700513
Alignment:
| Q |
29 |
taaattctcattatgccccctatatgctcaaagccccaaaaaatacactaccggaag |
85 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32700457 |
taaattctcaatctgcctcctatatgctcaaagcccccaaaaatacactaccggaag |
32700513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 8268499 - 8268549
Alignment:
| Q |
173 |
gcttaccctatcaagtttgttggtcaggttgttagtttcagcactctgatt |
223 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
8268499 |
gcttactctatcaagtttgttagtcaggttgttagtttcagcattctgatt |
8268549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University