View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10380_low_29 (Length: 238)

Name: NF10380_low_29
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10380_low_29
NF10380_low_29
[»] chr1 (5 HSPs)
chr1 (45-223)||(41452942-41453120)
chr1 (45-177)||(41431165-41431297)
chr1 (56-174)||(41425755-41425873)
chr1 (56-173)||(41441817-41441934)
chr1 (2-35)||(41453134-41453167)
[»] chr2 (2 HSPs)
chr2 (45-223)||(33362944-33363122)
chr2 (45-175)||(33369411-33369541)
[»] scaffold0648 (1 HSPs)
scaffold0648 (45-174)||(5244-5373)
[»] scaffold0274 (2 HSPs)
scaffold0274 (45-174)||(18085-18214)
scaffold0274 (126-177)||(13707-13758)
[»] chr7 (1 HSPs)
chr7 (45-163)||(7763517-7763635)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 41453120 - 41452942
Alignment:
Q  45 ctaacctgcttcatggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagttt 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  41453120 ctaacctgcttcatggaggaattatttttactaaaataatggtctgaagtgtcagtgacaatgtcaaattacttaaaacttcgaagtttcttcagagttt 41453021  T
Q  145 cgttttcgggttcatcagtgattctcaaacccgctgtgtccacagctgctccatcacttccgactctggcagatttgag 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  41453020 cgttttcgggttcatcagtgattctcaaacccgctgtgtccacagctgctccatcacgtccggctctggcagatttgag 41452942  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 41431297 - 41431165
Alignment:
Q  45 ctaacctgcttcatggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagttt 144  Q
    |||||||||||||||||||||| ||||||| |||| |||||||| ||| |||  | ||||  ||||||||||||||| ||||||||||||||||||||||    
T  41431297 ctaacctgcttcatggaggaatgatttttaataaagtaatggtccgaactgtccgcgacagcgtcaaattgcttaaagcttcgaagtttcttcagagttt 41431198  T
Q  145 cgttttcgggttcatcagtgattctcaaacccg 177  Q
    | ||||| ||||||||||||||| |||||||||    
T  41431197 cattttcaggttcatcagtgattgtcaaacccg 41431165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 41425873 - 41425755
Alignment:
Q  56 catggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagtttcgttttcgggt 155  Q
    ||||||||||| | ||||| |||| |||||||||||||||| | ||| | ||||||||||||||||||||| ||||||  |||||||||| |||||||||    
T  41425873 catggaggaatgacttttaataaagtaatggtctgaagtgtcactgatagtgtcaaattgcttaaaacttccaagttttctcagagtttcattttcgggt 41425774  T
Q  156 tcatcagtgattctcaaac 174  Q
    |||||||||||| ||||||    
T  41425773 tcatcagtgattgtcaaac 41425755  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 41441934 - 41441817
Alignment:
Q  56 catggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagtttcgttttcgggt 155  Q
    |||| ||||| |||||| | |||| | |||||||||| |||  |||||| |||||||||||||||||||| |||||||| |||||||||| |||||||||    
T  41441934 catgaaggaaatattttcaataaagttatggtctgaaatgtcggtgacagtgtcaaattgcttaaaactttgaagtttcctcagagtttcattttcgggt 41441835  T
Q  156 tcatcagtgattctcaaa 173  Q
    |||||||||||| |||||    
T  41441834 tcatcagtgattgtcaaa 41441817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 41453167 - 41453134
Alignment:
Q  2 aaaagtacgtctgtaagagacattttgagaaaag 35  Q
    |||||||||||||||||||||||||| |||||||    
T  41453167 aaaagtacgtctgtaagagacatttttagaaaag 41453134  T

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Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 33363122 - 33362944
Alignment:
Q  45 ctaacctgcttcatggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagttt 144  Q
    ||||||||||||| |||| ||||||||||| |||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| |||| ||||    
T  33363122 ctaacctgcttcacggagcaattatttttaataaagtaatggtctgaagtgtcagtaacagtgtcaaattgcttaaaacttcgaagtttcctcagggttt 33363023  T
Q  145 cgttttcgggttcatcagtgattctcaaacccgctgtgtccacagctgctccatcacttccgactctggcagatttgag 223  Q
    | ||||||||||||| ||||| | | |||||||  |   |||||||||||||||||| |||  ||||||||||||||||    
T  33363022 cattttcgggttcatgagtgactgtaaaacccgagggaaccacagctgctccatcacatccagctctggcagatttgag 33362944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 45 - 175
Target Start/End: Complemental strand, 33369541 - 33369411
Alignment:
Q  45 ctaacctgcttcatggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagttt 144  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| | |||||||    
T  33369541 ctaacctgcttcatggaggaattacttttattaaagtaatggtctgaggtgtcagtgacagtgtcaaattgcttaaaacttcgaagtttcctaagagttt 33369442  T
Q  145 cgttttcgggttcatcagtgattctcaaacc 175  Q
    | ||||||||||||||||||||| |||||||    
T  33369441 cattttcgggttcatcagtgattgtcaaacc 33369411  T

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Target: scaffold0648 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 5373 - 5244
Alignment:
Q  45 ctaacctgcttcatggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagttt 144  Q
    |||||||||  ||||||||||| | ||||| |||| |||||||| ||||||| | ||| | ||||||||||||||||||||| ||||||  |||||||||    
T  5373 ctaacctgcgccatggaggaatgacttttaataaagtaatggtccgaagtgtcactgatagtgtcaaattgcttaaaacttccaagttttctcagagttt 5274  T
Q  145 cgttttcgggttcatcagtgattctcaaac 174  Q
    | ||||||||||||||||||||| ||||||    
T  5273 cattttcgggttcatcagtgattgtcaaac 5244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 174
Target Start/End: Original strand, 18085 - 18214
Alignment:
Q  45 ctaacctgcttcatggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagttt 144  Q
    |||||||||  ||||||||||| | ||||| |||| |||||||| ||||||| | ||| | ||||||||||||||||||||| ||||||  |||||||||    
T  18085 ctaacctgcgccatggaggaatgacttttaataaagtaatggtccgaagtgtcactgatagtgtcaaattgcttaaaacttccaagttttctcagagttt 18184  T
Q  145 cgttttcgggttcatcagtgattctcaaac 174  Q
    | ||||||||||||||||||||| ||||||    
T  18185 cattttcgggttcatcagtgattgtcaaac 18214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 13707 - 13758
Alignment:
Q  126 cgaagtttcttcagagtttcgttttcgggttcatcagtgattctcaaacccg 177  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  13707 cgaagtttcttcagagtttcattttcaggttcatcagtgattgtcaaacccg 13758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 163
Target Start/End: Original strand, 7763517 - 7763635
Alignment:
Q  45 ctaacctgcttcatggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagttt 144  Q
    ||||| ||||||||||| ||||| |||||| || | | |||||||||| ||| | ||||| |||||||||||||||||||| |||||||| |||||||||    
T  7763517 ctaacatgcttcatggaagaattttttttaatatagtgatggtctgaaatgtcaatgacagtgtcaaattgcttaaaactttgaagtttcctcagagttt 7763616  T
Q  145 cgttttcgggttcatcagt 163  Q
    |  |||| |||| ||||||    
T  7763617 cactttctggtttatcagt 7763635  T

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