View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10380_low_3 (Length: 410)
Name: NF10380_low_3
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10380_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 9192008 - 9192399
Alignment:
| Q |
1 |
attgttaactaattatttgatctgcttaaagaaatatattaaccgtctataaatcttaactcaaccgataaaaatatcgaaattgtagttcatatactga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
9192008 |
attgttaactaattatttgatctgcttaaagaaatatattaaccgtctataaatcttaactcaaccgataaaaatattgaaattgtagttcatacactga |
9192107 |
T |
|
| Q |
101 |
ttccaccgtttatacgtgtgactttctaatgatataaagaaaattgttgataatgatattttttccacaaattaaaatttcaggatccgaccctctataa |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9192108 |
ttc-accgtttatacgtgtgactttctaatgatataaagaaaattgtttataatgatattttttccacaaattaaaatttcagggtccgaccctctataa |
9192206 |
T |
|
| Q |
201 |
cgtcccaattagagccaaatgggttttgacagttgaaaaggcagagactcacctcaccacctccctcacgagtacgttgtgggtattaatgttgctgtct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9192207 |
cgtcccaattagagccaaatgggttttgacagttgaaaaggcagagactcacctcaccacctccctcacgagtacgttgtgggtattaatgttgctgtct |
9192306 |
T |
|
| Q |
301 |
gtcaatttcagaaagagattccctcatttaatattttccactctttctgctaatttctctgcaaaacacaacacaaatcagttgggtagtatc |
393 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9192307 |
gtcgatttcagaaagagattccctcatttaatattttccactctttctgctaatttctctgcaaaacacaacacaaaccagttgggtagtatc |
9192399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 35868260 - 35868297
Alignment:
| Q |
49 |
ataaatcttaactcaaccgataaaaatatcgaaattgt |
86 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35868260 |
ataagtcttaactcaaccgataaaaatatcgaaattgt |
35868297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 41843914 - 41843949
Alignment:
| Q |
51 |
aaatcttaactcaaccgataaaaatatcgaaattgt |
86 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41843914 |
aaatcttaactcaaccgataaaaatattgaaattgt |
41843949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University