View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10380_low_30 (Length: 230)
Name: NF10380_low_30
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10380_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 31851357 - 31851193
Alignment:
| Q |
1 |
cactttgtctctagatttggtttttaatatttgaaccattgctcaagtattaattattttgatattgacaataagattttaaataagagaatgctaaagt |
100 |
Q |
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| T |
31851357 |
cactttgtctctagatttggtttttaatatttgaactattgctcaagtattaattattttgatattgacaataagattttaaataagagaatgctaaagt |
31851258 |
T |
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| Q |
101 |
gtac-aacttattgttgtgctattgaatgaatgggactgattaatgtgtttttaaataataagga |
164 |
Q |
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| T |
31851257 |
gtacaaacttattgttgtgctattgaatgaatgggactgattaatgtgtttttaaataataagga |
31851193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 31853054 - 31852955
Alignment:
| Q |
68 |
acaataagattttaaataagagaatg-ctaaagtgtac-aacttattgttgtgctattgaatgaatgggactgattaatgtgt-ttttaaataataagga |
164 |
Q |
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| T |
31853054 |
acaataagatttgaagtaagagaaaggcaaaagtgtacgaacttattgtcgtgctattgaacgaatgggactgattaatgtgtcttttaaataacaagga |
31852955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 31853412 - 31853368
Alignment:
| Q |
29 |
atttgaaccattgctcaagtattaattattttgatattgacaata |
73 |
Q |
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| T |
31853412 |
atttgaacccttgctcaagtagtaattattttgatattaacaata |
31853368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 31851159 - 31851131
Alignment:
| Q |
196 |
gccggtaagtaaaacaataaagttttatg |
224 |
Q |
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| T |
31851159 |
gccggtaagtaaaacaataaagttttatg |
31851131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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