View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10380_low_32 (Length: 227)

Name: NF10380_low_32
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10380_low_32
NF10380_low_32
[»] chr5 (2 HSPs)
chr5 (49-145)||(37840396-37840492)
chr5 (1-34)||(37840361-37840394)
[»] chr4 (6 HSPs)
chr4 (55-132)||(40120008-40120085)
chr4 (89-131)||(14786019-14786061)
chr4 (55-105)||(42056314-42056363)
chr4 (89-143)||(42370590-42370644)
chr4 (89-142)||(24355820-24355873)
chr4 (83-127)||(55291271-55291315)
[»] chr8 (2 HSPs)
chr8 (51-135)||(5493793-5493877)
chr8 (93-143)||(34935150-34935200)
[»] chr2 (2 HSPs)
chr2 (89-142)||(34353269-34353322)
chr2 (89-134)||(37357272-37357317)
[»] chr6 (2 HSPs)
chr6 (91-143)||(15098928-15098980)
chr6 (82-132)||(11439101-11439151)
[»] scaffold0005 (1 HSPs)
scaffold0005 (89-131)||(53669-53711)
[»] chr7 (1 HSPs)
chr7 (89-143)||(2497729-2497783)
[»] chr3 (1 HSPs)
chr3 (89-143)||(26141735-26141789)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 37840396 - 37840492
Alignment:
Q  49 tatagagaaatgctaaccgatgcctccgaagcactgatttaggaaacaaatatagtaatattgcattgaaagttgtgcaatcaactcttcaaaaagt 145  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37840396 tatagagaaatactaaccgatgtctccgaaacactgatttaggaaacaaatatagtaatattgcattgaaagttgtgcaatcaactcttcaaaaagt 37840492  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37840361 - 37840394
Alignment:
Q  1 aattttagtataccatgatcatagcccatcacta 34  Q
    |||||||||||||||||| |||||||||||||||    
T  37840361 aattttagtataccatgaccatagcccatcacta 37840394  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 40120008 - 40120085
Alignment:
Q  55 gaaatgctaaccgatgcctccgaagcactgatttaggaaacaaatatagtaatattgcattgaaagttgtgcaatcaa 132  Q
    |||||| |||||| |||| ||||||||||| || ||||||||||||||||||||| |||||| || ||||||||||||    
T  40120008 gaaatgttaaccggtgcccccgaagcactgtttaaggaaacaaatatagtaatatcgcattgtaacttgtgcaatcaa 40120085  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 14786019 - 14786061
Alignment:
Q  89 aggaaacaaatatagtaatattgcattgaaagttgtgcaatca 131  Q
    |||||||||||||| ||||||| |||||||| |||||||||||    
T  14786019 aggaaacaaatataataatattacattgaaatttgtgcaatca 14786061  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 42056363 - 42056314
Alignment:
Q  55 gaaatgctaaccgatgcctccgaagcactgatttaggaaacaaatatagta 105  Q
    |||||| |||||||||||||| |||||||| || |||||||||||||||||    
T  42056363 gaaatgttaaccgatgcctcc-aagcactggttaaggaaacaaatatagta 42056314  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 42370644 - 42370590
Alignment:
Q  89 aggaaacaaatatagtaatattgcattgaaagttgtgcaatcaactcttcaaaaa 143  Q
    ||||||||||||| ||| ||||| |||||||||||| |||||||||  |||||||    
T  42370644 aggaaacaaatattgtagtattgtattgaaagttgtacaatcaacttctcaaaaa 42370590  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 24355873 - 24355820
Alignment:
Q  89 aggaaacaaatatagtaatattgcattgaaagttgtgcaatcaactcttcaaaa 142  Q
    ||||| ||||||||||||||| |||||| || ||||||| ||||||| ||||||    
T  24355873 aggaagcaaatatagtaatatcgcattggaacttgtgcattcaactcctcaaaa 24355820  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 55291271 - 55291315
Alignment:
Q  83 tgatttaggaaacaaatatagtaatattgcattgaaagttgtgca 127  Q
    ||||| ||||| ||||||||||||| ||||||||||| |||||||    
T  55291271 tgattaaggaagcaaatatagtaattttgcattgaaacttgtgca 55291315  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 5493877 - 5493793
Alignment:
Q  51 tagagaaatgctaaccgatgcctccgaagcactgatttaggaaacaaatatagtaatattgcattgaaagttgtgcaatcaactc 135  Q
    ||||| |||| |||||||||||| ||  |||||| || |||||||||||||||||||||| |||||||| || |||| |||||||    
T  5493877 tagagtaatgttaaccgatgccttcggggcactggttaaggaaacaaatatagtaatattacattgaaacttatgcagtcaactc 5493793  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 34935200 - 34935150
Alignment:
Q  93 aacaaatatagtaatattgcattgaaagttgtgcaatcaactcttcaaaaa 143  Q
    |||||||||| |||| |||||||| || ||||||| |||||||||||||||    
T  34935200 aacaaatataataatcttgcattggaacttgtgcattcaactcttcaaaaa 34935150  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 34353269 - 34353322
Alignment:
Q  89 aggaaacaaatatagtaatattgcattgaaagttgtgcaatcaactcttcaaaa 142  Q
    ||||| ||||||||||||| ||||||||||| ||||||| ||||||| ||||||    
T  34353269 aggaaccaaatatagtaattttgcattgaaacttgtgcattcaactcctcaaaa 34353322  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 37357272 - 37357317
Alignment:
Q  89 aggaaacaaatatagtaatattgcattgaaagttgtgcaatcaact 134  Q
    ||||| ||||||||||||| ||||||||||| ||||||| ||||||    
T  37357272 aggaagcaaatatagtaatcttgcattgaaacttgtgcattcaact 37357317  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 15098980 - 15098928
Alignment:
Q  91 gaaacaaatatagtaatattgcattgaaagttgtgcaatcaactcttcaaaaa 143  Q
    |||||||||||||||||||||| || ||||||||   ||||||||||||||||    
T  15098980 gaaacaaatatagtaatattgcgttaaaagttgtatgatcaactcttcaaaaa 15098928  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 11439151 - 11439101
Alignment:
Q  82 ctgatttaggaaacaaatatagtaatattgcattgaaagttgtgcaatcaa 132  Q
    |||||| | ||||||||||||||||||||| ||||||| ||||| ||||||    
T  11439151 ctgattgaagaaacaaatatagtaatattgtattgaaatttgtgtaatcaa 11439101  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 53711 - 53669
Alignment:
Q  89 aggaaacaaatatagtaatattgcattgaaagttgtgcaatca 131  Q
    |||||||||||||| ||||||| |||||||| |||||||||||    
T  53711 aggaaacaaatataataatattacattgaaatttgtgcaatca 53669  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 2497783 - 2497729
Alignment:
Q  89 aggaaacaaatatagtaatattgcattgaaagttgtgcaatcaactcttcaaaaa 143  Q
    |||||| ||||||| |||| ||||||||||| || |||| |||||||||||||||    
T  2497783 aggaaataaatataataatcttgcattgaaatttatgcattcaactcttcaaaaa 2497729  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 26141789 - 26141735
Alignment:
Q  89 aggaaacaaatatagtaatattgcattgaaagttgtgcaatcaactcttcaaaaa 143  Q
    ||||| ||||||||||||| |||||||| || ||||||| ||||||| |||||||    
T  26141789 aggaagcaaatatagtaatcttgcattggaacttgtgcattcaactcctcaaaaa 26141735  T

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