View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10380_low_5 (Length: 391)
Name: NF10380_low_5
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10380_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 27807984 - 27808354
Alignment:
| Q |
1 |
caaaaagtaaccgtgaaacagaaacaaatcgaggagaaaataattgttagcattgattgatccaaattgatatatacatgtgtacatatacatacaatct |
100 |
Q |
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| T |
27807984 |
caaaaagtaaccgtgaaacagaaacaaatcgaggagaaaataattgttagcattgattgatccaaattgatatatacatgtgtacatatacatacaatct |
27808083 |
T |
|
| Q |
101 |
tcaatatgcaatgctttgtgaaaatgtcaactacttggtaccagttctccaatgtcaaaagtcttggaatattacaaacaagaatgaaggatgagaagct |
200 |
Q |
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| T |
27808084 |
tcaatatgcaatgctttgtgaaaatgtcaactacttggtaccagttctccaatgtcaaaagtcttggaatattacaaacaagaatgaaggataagaagct |
27808183 |
T |
|
| Q |
201 |
agagaagcatagcagattgattatgacatgaaaccatgcatagaggagaaagaagaaaaatcaaagtgaacaaactatggctccttgttgcataacattt |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
27808184 |
--agaagcatagcagattgattatgacatgaaac----catagaggagaaagaagaaaaatcaaagtgaac-aactatggatccttgttgcataacattt |
27808276 |
T |
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| Q |
301 |
tgtgtggagatttgtattgtag---aataagggatggtactc-tattaaagagaaaggccgcaaccggtacacattct |
374 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27808277 |
tgtgtggagatttgtattgtagaataataagggatggtactcttattaaagagaaaggccgcaaccggtacacattct |
27808354 |
T |
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