View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10380_low_8 (Length: 361)
Name: NF10380_low_8
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10380_low_8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 1669118 - 1668775
Alignment:
| Q |
18 |
atatagaggacaaaagagcatggttcctctccaatcattttatccatacctagccataatttttctattattccatgttttacatttgtcatccattgaa |
117 |
Q |
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| T |
1669118 |
atatagaggacaaaagagcatggttcctctccaatcattttatccatacctagccataatttttctattattccatgttttacatttgtcatccattgaa |
1669019 |
T |
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| Q |
118 |
gcccaaaatgacgggttcacaatcaaactgtttcgtaaaacatctaacaatattcaaaatattgtacaagcacctataaatgcctatattggccaatatc |
217 |
Q |
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| T |
1669018 |
gcccaaaatgacgggttcactatcaaactgtttcgtaaaacatctaacaatattcaaaatattgtacaagcacctataaatgcctatattggccaacatc |
1668919 |
T |
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| Q |
218 |
tcatggagttgtatattggaactccaccaataaaaataacaggccttgtagacacaggaagtgatcttatatggatccaatgtgcaccttgtttagggtg |
317 |
Q |
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| T |
1668918 |
tcatggaaatatatattggaactccaccaataaaaataacaggccttgtagacacaggaagtgatcttatatggatccaatgtgcaccttgtttaggttg |
1668819 |
T |
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| Q |
318 |
ctacaaacaaataaaacccatgtttgatcctctaaaatcatcca |
361 |
Q |
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| T |
1668818 |
ctacaaacaaataaaacccatgtttgatcctctaaaatcatcca |
1668775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 37 - 356
Target Start/End: Complemental strand, 1680647 - 1680316
Alignment:
| Q |
37 |
atggttcctctccaatcattttatccatacctagccataatttttctattattccatgttttacatttgtcatccattgaagcccaaaatgacgggttca |
136 |
Q |
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| T |
1680647 |
atggttcctctccaatcatttaatccatacctagccatcattttactattgttccacctcttacatttttcatccattgaagcccaaaatgacgggttca |
1680548 |
T |
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| Q |
137 |
caatcaaactgtttcgtaaaacatct------------aacaatattcaaaatattgtacaagcacctataaatgcctatattggccaatatctcatgga |
224 |
Q |
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| T |
1680547 |
ctgttaaactcattcggaagtcatctcacctttcatctaacaatattcaagatattgtacaagcacctataaatgcatatattggccaatatctcatgga |
1680448 |
T |
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| Q |
225 |
gttgtatattggaactccaccaataaaaataacaggccttgtagacacaggaagtgatcttatatggatccaatgtgcaccttgtttagggtgctacaaa |
324 |
Q |
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| T |
1680447 |
gttgtatattggaactccaccaataaaaatatcaggtaccgtagacacgggaagtgacctgatatgggtccaatgtgtaccttgtttagggtgctacaac |
1680348 |
T |
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| Q |
325 |
caaataaaacccatgtttgatcctctaaaatc |
356 |
Q |
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| T |
1680347 |
caaataaaccctatgtttgatcctctaaaatc |
1680316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 1661662 - 1661515
Alignment:
| Q |
18 |
atatagaggacaaaagagcatggttcctctccaatcattttatccatacctagccataatttttctattattccatgttttacatttgtcatccattgaa |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||| |||| | |||||||||| |
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| T |
1661662 |
atatagaggacaaaagaacatggttcctctccaatcattttatccatatttagccatcatttttctattattccatcttttatattttttatccattgaa |
1661563 |
T |
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| Q |
118 |
gcccaaaatgacgggttcacaatcaaactgtttcgtaaaacatctaac |
165 |
Q |
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| T |
1661562 |
gcccaaaatgacgggttcaccgtcaaactgcttcgtaaaacatctaac |
1661515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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