View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10380_low_9 (Length: 340)
Name: NF10380_low_9
Description: NF10380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10380_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 17227218 - 17227476
Alignment:
| Q |
12 |
agagatgaaatgaggttggttggttgtcagagaaagaagggaagaaagtgaagagaagttatgtgaaatgagtatggagagtaagggaatagtatttatt |
111 |
Q |
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| T |
17227218 |
agagatgaaatgaggttggttggttgtcagagaaagaagggaagaaagtgaagagaagttatgtgaaatgagtatggagagtaagggaatagtatttatt |
17227317 |
T |
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| Q |
112 |
aagagagaaataaataaaagtggttatatgttttttgtaatgttgctaaggtatgataataaaattaaatttggagaa-agagtgaagaggagtgggttg |
210 |
Q |
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| T |
17227318 |
aagagagaaataaataaaagtggttatatgttttttgtaatgttgctaaggtatgataataaaattaaatttggcgaagagagtgaagaggagtgggttg |
17227417 |
T |
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| Q |
211 |
aagttgaaatgaagaggacaagtgcatgggagaaagaagtgggctatgggtgttattaat |
270 |
Q |
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| T |
17227418 |
aagttg-aatgaagaggacaagtgcatgggagaaagaagtgggctatgggtgttattaat |
17227476 |
T |
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