View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10381_high_10 (Length: 331)
Name: NF10381_high_10
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10381_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 30350231 - 30350392
Alignment:
| Q |
18 |
atacattaggtgagtttgatcaatttagaaatttccaatatggtatatatgaaaggtaagagaaaaattggttttcttagttcaattcttagtgatagtg |
117 |
Q |
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| T |
30350231 |
atacattaggtgagtttgatcaatttagaaatttccaatatggtatatatgaaaggtaagagaaaaattggttttcttagttcaattcttagtgatagtg |
30350330 |
T |
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| Q |
118 |
aactacatgtggttgttgtaaatgtagtggaccttgtatcttgactctttcaatttgggggg |
179 |
Q |
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| T |
30350331 |
aactacatgtggttgttgtaaatgtagtggaccttgtatcttgactctttcaattcgggggg |
30350392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 30350412 - 30350567
Alignment:
| Q |
174 |
ggggggtgtagaaataagttcaattttgcagcagtttctggagagtttagtgagaaaatctcatcttttgtagataggttaagtttttataactatgttc |
273 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30350412 |
ggggggggtagaaataagttcaattttgcagcagtttctggagagtttagtgagaaaatctcatcttttgtagataggttaagtttttataactatgttc |
30350511 |
T |
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| Q |
274 |
catacaccactagcttgtatggcactatattgggttccttattctctatgcctttg |
329 |
Q |
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| T |
30350512 |
catacaccactagcttgtatggcactatattgggttccttattctctatgcttttg |
30350567 |
T |
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