View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10381_high_12 (Length: 270)

Name: NF10381_high_12
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10381_high_12
NF10381_high_12
[»] chr6 (3 HSPs)
chr6 (16-261)||(31265357-31265602)
chr6 (60-259)||(22357617-22357817)
chr6 (66-259)||(22045254-22045448)
[»] chr1 (1 HSPs)
chr1 (18-261)||(12780766-12781010)
[»] chr2 (1 HSPs)
chr2 (66-259)||(44355641-44355835)
[»] chr8 (3 HSPs)
chr8 (40-259)||(31395865-31396085)
chr8 (62-259)||(2501330-2501528)
chr8 (62-259)||(2502011-2502209)
[»] scaffold0008 (1 HSPs)
scaffold0008 (18-259)||(84232-84476)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 31265357 - 31265602
Alignment:
Q  16 atttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31265357 atttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaa 31265456  T
Q  116 taaagcaaatttgtgttatcatccatcaattttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacata 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31265457 taaagcaaatttgtgttatcatccatcaattttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacata 31265556  T
Q  216 atggttaaaggcttgaacaaggacatcattttccatgtcttcttct 261  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  31265557 atggttaaaggcttgaacaaggacatcattttccatgttttcttct 31265602  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 60 - 259
Target Start/End: Original strand, 22357617 - 22357817
Alignment:
Q  60 catgaacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaat-tttgatgttcaac 158  Q
    |||||||||||||| |||| ||| ||||||||||||| ||||||| ||| ||||   ||| ||||| | |||  | | ||| |||  ||||||||||| |    
T  22357617 catgaacactatttgcttttaatatcctcatatcatcctcaaggattgaaacccgggaaaacaaatctttgtgtttacccaccaacctttgatgttcagc 22357716  T
Q  159 caaatatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttct 258  Q
    || ||| | |||||||||||||| |||| || |||||||||||| ||||  |  ||||||||||| ||||||||||| |||||  |||||||||||||||    
T  22357717 catataagcttgcacatcaaataaagggtatgcaccatctctaataccaacttgataatggttaacggcttgaacaaagacattgttttccatgtcttct 22357816  T
Q  259 t 259  Q
    |    
T  22357817 t 22357817  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 259
Target Start/End: Complemental strand, 22045448 - 22045254
Alignment:
Q  66 cactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaat-tttgatgttcaaccaaata 164  Q
    ||||||||||||| ||| ||||||||||||| ||||||| ||| || | | ||||||||| | |||  ||| ||| |||  ||||||||||| ||| |||    
T  22045448 cactattttcttttaatatcctcatatcatcctcaaggattgaaacacgagaaagcaaatctttgtgttcacccaccaacctttgatgttcagccatata 22045349  T
Q  165 tgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttctt 259  Q
     | |||||||||||||| |||| || ||||||||| || ||||  |  | ||||||||| ||||| ||||| |||||||||| ||||||||||||    
T  22045348 agcttgcacatcaaataaagggtatgcaccatctccaataccaacttgagaatggttaacggctttaacaaagacatcatttaccatgtcttctt 22045254  T

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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 12780766 - 12781010
Alignment:
Q  18 ttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaata 117  Q
    ||||||||||||||||||||||||| |||||||||| |  |   | |||| | ||| |||| ||||||||||||||||| |||||   ||| |||| ||     
T  12780766 ttcctacttccccaccacttggtttcgaaatattttccctactttcaacattgtttgcttttaatgtcctcatatcatcctcaagtgttgaaacccgatt 12780865  T
Q  118 aagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataa 216  Q
    ||| ||||   |||  ||| ||||||| |||||||||||| ||||||| |||||||||||||||| ||||  | || ||||||||||||||  | || ||    
T  12780866 aagaaaatccttgtgttcacccatcaacttttgatgttcagccaaataagtttgcacatcaaatagagggtttgcatcatctctaaaaccaacttcaaaa 12780965  T
Q  217 tggttaaaggcttgaacaaggacatcattttccatgtcttcttct 261  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||    
T  12780966 tggttaacggcttgaacaaggacttcattttccatgtcttcttct 12781010  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 259
Target Start/End: Complemental strand, 44355835 - 44355641
Alignment:
Q  66 cactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaat-tttgatgttcaaccaaata 164  Q
    ||||||||||||| ||| ||||||||||||| ||||||| ||| || | | ||||||||| | |||  ||| ||| |||  ||||||||||| ||| |||    
T  44355835 cactattttcttttaatatcctcatatcatcctcaaggattgaaacacgagaaagcaaatctttgtgttcacccaccaacctttgatgttcagccatata 44355736  T
Q  165 tgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttctt 259  Q
     | |||||||||||||| |||| || ||||||||| || ||||  |  | ||||||||| ||||| ||||| |||||||||| ||||||||||||    
T  44355735 agcttgcacatcaaataaagggtatgcaccatctccaataccaacttgagaatggttaacggctttaacaaagacatcatttaccatgtcttctt 44355641  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 259
Target Start/End: Original strand, 31395865 - 31396085
Alignment:
Q  40 ttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatcc 139  Q
    |||||||||||||| |  | | ||||||||||||||||| ||| ||||||||||||| ||||||| ||| || |   ||||||||| | | |  ||  ||    
T  31395865 ttttgaaatattttccctaccgtgaacactattttcttttaatatcctcatatcatcctcaaggattgaaacacgggaaagcaaatctttttgttcgccc 31395964  T
Q  140 atcaat-tttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaagga 238  Q
    | |||  ||||||||||| ||| ||| | |||||||||||||| |||| || ||||||||| || ||||  | || ||||||||| ||||| ||||| ||    
T  31395965 accaacctttgatgttcagccatataagcttgcacatcaaataaagggtatgcaccatctccaataccaacttcaaaatggttaacggctttaacaaaga 31396064  T
Q  239 catcattttccatgtcttctt 259  Q
    ||||||||| |||||||||||    
T  31396065 catcatttttcatgtcttctt 31396085  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 259
Target Start/End: Complemental strand, 2501528 - 2501330
Alignment:
Q  62 tgaacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaat-tttgatgttcaacca 160  Q
    ||||||||||||  ||| ||| ||||||||||||| ||||||| ||| || |   ||||||||| | |||  ||  ||| |||  ||||||||||| |||    
T  2501528 tgaacactatttgattttaatatcctcatatcatcctcaaggattgaaacacgggaaagcaaatatttgtgttcgcccaccaacctttgatgttcagcca 2501429  T
Q  161 aatatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttctt 259  Q
     ||| | |||||||||||||| |||| |  ||||||||| || ||||  | || ||||||||| ||||| ||| | |||||||||||||||||| ||||    
T  2501428 tataagcttgcacatcaaataaagggtacgcaccatctccaataccaacttcagaatggttaacggctttaaccaagacatcattttccatgtcctctt 2501330  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 259
Target Start/End: Original strand, 2502011 - 2502209
Alignment:
Q  62 tgaacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaat-tttgatgttcaacca 160  Q
    |||||||||||| |||| ||| || |||||||||| ||||||| ||| || |   ||||||||| | |||  ||  ||| |||  ||||||||||| |||    
T  2502011 tgaacactatttgctttaaatatcatcatatcatcctcaaggattgaaacacgggaaagcaaatctttgtgttcgcccaccaacctttgatgttcagcca 2502110  T
Q  161 aatatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttctt 259  Q
     ||| | |||||||||||||| |||  || ||||||||| || ||||  | || ||| ||||| ||||| ||| |  ||||||||||||||||||||||    
T  2502111 tataagcttgcacatcaaataaaggatatgcaccatctccaataccaacttcagaatcgttaacggctttaaccaatacatcattttccatgtcttctt 2502209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 84232 - 84476
Alignment:
Q  18 ttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtc--ctcatatcatcatcaaggactgatacccaa 115  Q
    ||||||||||| | | ||||||  | |||||||||| || | | |||||||||||| |||| ||| ||  ||||||||||| ||||||| ||| || |      
T  84232 ttcctacttccacgctacttggcatcgaaatattttccttaccgtgaacactatttgcttttaatatctcctcatatcatcctcaaggattgaaacacgg 84331  T
Q  116 taaagcaaatttgtgttatcatccatcaat-tttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacat 214  Q
     ||||||||| | |||  ||||||| |||  ||||||||| | ||| ||| | |||||||||||||| |||| || ||||||||| || ||||  |  |     
T  84332 gaaagcaaatctttgtgttcatccaccaacctttgatgtttagccatataagcttgcacatcaaataaagggtatgcaccatctccaataccaacttgag 84431  T
Q  215 aatggttaaaggcttgaacaaggacatcattttccatgtcttctt 259  Q
    ||||||||| ||||| ||||| |||||||||||||||||||||||    
T  84432 aatggttaacggctttaacaaagacatcattttccatgtcttctt 84476  T

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