View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10381_high_8 (Length: 338)
Name: NF10381_high_8
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10381_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 195 - 333
Target Start/End: Complemental strand, 39941202 - 39941064
Alignment:
| Q |
195 |
aaactgaagatcggtttcgaactcctgactaaatgaaaaatcagcatcaccaatatcatcattactaaaagaggagtcacttatatcttcgtcactttca |
294 |
Q |
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| T |
39941202 |
aaactgaagatcggtttcgaactcctgactaaatgaaaaatcagcatcaccaatatcatcattactaaaagaggagtcacttatatcttcgtcactttca |
39941103 |
T |
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| Q |
295 |
ctttcaatggttgctaggtttgtgactgttcatctctct |
333 |
Q |
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| T |
39941102 |
ctttcaatggttgctaggtttgtgaatgttgttctctct |
39941064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 39941379 - 39941260
Alignment:
| Q |
18 |
taagcaagaagagatttcattagctggtaatcccctcttctcttctcctatgaagtttcctaattcaatcaactcttcataggataattcatctggatca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39941379 |
taagcaagaagagatttcattagctggtaatcccctcttctcttctcctatgaagtttcctaattcaatcaactcttcataggataattcatctggatca |
39941280 |
T |
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| Q |
118 |
acctcatcttcttccaactc |
137 |
Q |
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|||||||||||||||||||| |
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| T |
39941279 |
acctcatcttcttccaactc |
39941260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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