View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10381_high_9 (Length: 334)
Name: NF10381_high_9
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10381_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 27807075 - 27807397
Alignment:
| Q |
7 |
gtatacattataatactactatattcctacgttgggtgggattttcatgtgactaatnnnnnnnnnnnnttgaataattaacacttgtgattaattaaca |
106 |
Q |
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| T |
27807075 |
gtatacattataatactactatattcctacgttgggtgggattttcatgtgactaataaaaataaaaaattgaataattaacacttgtgattaattaaca |
27807174 |
T |
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| Q |
107 |
attagcatatggcaccctcttatttgtgtatctttagcatttcttttataaaataaataaagtggtggaaagatgagatgagaggttataactttctaag |
206 |
Q |
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| T |
27807175 |
attagcatatggcaccctcttatttgtgtatctttagcatttcttttataaaataaataaagtggtggaaagat-----gagaggttataactttctaag |
27807269 |
T |
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| Q |
207 |
atgataataagaatcaatcaaattcattagtgaaattaaggtagttagatctcaatcaaactttaatttggtttcatggatctgatgttatgttctgtaa |
306 |
Q |
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| T |
27807270 |
atgataataagaatcaatcaaattcattagtgaaattaaggtagttagatctcaatcaaactttaatttggtttcatggatctgatgttatgttctgtaa |
27807369 |
T |
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| Q |
307 |
atgaaatactaacaacaatttctttaat |
334 |
Q |
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| T |
27807370 |
atgaaatactaacaacaatttctttaat |
27807397 |
T |
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