View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10381_low_10 (Length: 393)
Name: NF10381_low_10
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10381_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 46927840 - 46928117
Alignment:
| Q |
18 |
taattaaccaagggtatcatgttatacttatttagccacctttggataaagttcatttcatattctttattgtaaaatgt-----aagaaaataagaaca |
112 |
Q |
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| T |
46927840 |
taattaactaagggtatcatgttatacttatttagccacctttggattaagttcatttcatattctttattgt-aaatgtaagaaaagaaaataagaaca |
46927938 |
T |
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| Q |
113 |
tttgttaataaatatcactccggtccttttctaatacaatattaacagtataataaaagtagatggtccagttgcacatgcaaagctttcttctcaaatg |
212 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46927939 |
ttttttaataaataccactccggtccttttctaatacaatattaacagtataataaaagtagatggtccagttgcacatgcaaagctttcttctcaaatg |
46928038 |
T |
|
| Q |
213 |
ctcacttatgttctcttatctaaattagctaacttgatctttccaccacaagactttatttggtggatttaatccttcc |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46928039 |
ctcacttatgttctcttatctaaattagctaacttgatctttccaccacaagactttatttggtggatttaatccttcc |
46928117 |
T |
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