View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10381_low_11 (Length: 392)
Name: NF10381_low_11
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10381_low_11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 33592108 - 33592508
Alignment:
| Q |
1 |
gttacgtctttattctaactactgtatactaatactaatgtgtgtggttgttaattttgtgtactcttgtactcagattttgcaatcaattgtatgaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33592108 |
gttacgtctttattctaactactgtatactaatactaatgtgtgtggttgtaaattttgtgtactcttgtactcagattttgcaatcaattgtatgaaaa |
33592207 |
T |
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| Q |
101 |
caaaaagcataatttaatcatgggtgtaccaatcattatcaaaaattatatgacacatcaaaatgtcccatatatataaccgtgttatttagatat---- |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33592208 |
caaaaagcataatttaatcatgggtgtaccaatcattaccaaaaattatatgacacatcaaaatgtcctatatatataaccgtgttatttagatataaaa |
33592307 |
T |
|
| Q |
197 |
-----aaacaaaaattaatggcaaaatgaaatatattaacaacaaaagagcgatacaaatgttttacaacacgaccagcaagaccattaggagtacccga |
291 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
33592308 |
aaaaaaaaaaaaaattaatggcaaaatgaaatatattaacaacaaaagagcgatacaaatgttttacaacaagaccagcaagagcattaggagtacccga |
33592407 |
T |
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| Q |
292 |
agatacgaataagcctggatgtcggacccggatagaaggaaattatagtataaaagttgcaaagtgtttaaatactccggggtaatgtcggattttttgg |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
33592408 |
agatacgaataagcctggatgtcggacccggatagaaggaaattatagtataaaagttgcaaagtgtttaaatattctggggtaatgtcggattttttgg |
33592507 |
T |
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| Q |
392 |
t |
392 |
Q |
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| T |
33592508 |
t |
33592508 |
T |
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