View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10381_low_18 (Length: 309)
Name: NF10381_low_18
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10381_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 42071027 - 42071287
Alignment:
| Q |
19 |
acattgccaggattccgtgttacattcaatcatattttaaaaaataatgaacaaagaccataatattaaataatgaagggtataatttttaccataaata |
118 |
Q |
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| T |
42071027 |
acattgccaggattccgtgttacattcaatcatattttaaaaaataatgaacaaagacca----------------------taatttttaccataaata |
42071104 |
T |
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| Q |
119 |
tagcttcaaatatttgtgaatgacattatctttataaaaaagagatgttcttgtgagagaacgaacttacacatttggtttgattcctgtctcagcaatg |
218 |
Q |
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| T |
42071105 |
tagcttcaaatatttgtgaatgacattatctttataaaaaagagatgttcttgtgagagaac----ttacacatttggtttgattcctgtctcagcaatg |
42071200 |
T |
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| Q |
219 |
gcagggttggtcgaagatacactccctacaaatactaaggatcatgatgaatccaaacttcccattgcaggttaccctttgcttctc |
305 |
Q |
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| T |
42071201 |
gcagggttggtcgaagatacactccctacaaatactaaggatcatgatgaatccaaacttcccattgcaggttaccctttacttctc |
42071287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 187 - 305
Target Start/End: Original strand, 42079395 - 42079513
Alignment:
| Q |
187 |
acacatttggtttgattcctgtctcagcaatggcagggttggtcgaagatacactccctacaaatactaaggatcatgatgaatccaaacttcccattgc |
286 |
Q |
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| T |
42079395 |
acacatttggtttcattactgtctcagcaatggcagggttggtcgaagatgcactccctgcccatactaaggatcatgatcaatccaaacttgccattgc |
42079494 |
T |
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| Q |
287 |
aggttaccctttgcttctc |
305 |
Q |
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| T |
42079495 |
aggttaccctttacttctc |
42079513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 42079151 - 42079249
Alignment:
| Q |
19 |
acattgccaggattccgtgttacattcaatcatattttaaaaaataatgaacaaagaccataata----ttaaataatgaagggtataatttttaccata |
114 |
Q |
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| T |
42079151 |
acattgccaggatttcgtgtcacattcagtcatgctttaaagaa-aatgaataaacaccataatacaggttaaataatgaaggttgtaatttttatcata |
42079249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 42055080 - 42055113
Alignment:
| Q |
261 |
catgatgaatccaaacttcccattgcaggttacc |
294 |
Q |
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| T |
42055080 |
catgatgaatccaaacttgccattgcaggttacc |
42055113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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