View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10381_low_2 (Length: 616)

Name: NF10381_low_2
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10381_low_2
NF10381_low_2
[»] chr1 (3 HSPs)
chr1 (12-601)||(31321758-31322350)
chr1 (450-601)||(31321296-31321447)
chr1 (480-589)||(34650781-34650890)
[»] chr4 (9 HSPs)
chr4 (127-331)||(42602016-42602213)
chr4 (371-454)||(42602474-42602557)
chr4 (490-601)||(8332215-8332326)
chr4 (38-104)||(42601817-42601880)
chr4 (521-602)||(7491616-7491697)
chr4 (501-574)||(7500711-7500784)
chr4 (526-602)||(36139553-36139629)
chr4 (501-574)||(7492680-7492753)
chr4 (521-602)||(7499665-7499746)
[»] chr8 (4 HSPs)
chr8 (449-588)||(2687433-2687573)
chr8 (464-596)||(27824119-27824251)
chr8 (501-553)||(27166985-27167037)
chr8 (507-552)||(17097344-17097389)
[»] chr5 (6 HSPs)
chr5 (473-592)||(13163522-13163640)
chr5 (471-601)||(38997591-38997722)
chr5 (450-552)||(37498509-37498611)
chr5 (19-86)||(37497958-37498026)
chr5 (495-601)||(28804006-28804111)
chr5 (481-584)||(37497494-37497596)
[»] chr6 (1 HSPs)
chr6 (449-585)||(28636113-28636250)
[»] chr7 (5 HSPs)
chr7 (489-558)||(3697875-3697944)
chr7 (459-574)||(28686756-28686870)
chr7 (507-601)||(35711282-35711376)
chr7 (529-601)||(3704710-3704782)
chr7 (521-601)||(39705007-39705087)
[»] chr2 (1 HSPs)
chr2 (450-601)||(12028394-12028538)


Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 12 - 601
Target Start/End: Original strand, 31321758 - 31322350
Alignment:
Q  12 atggacatcaaatgtatatatgaaatcttgactataaaattaagaacataaa-gtaatattgatgtattaatacaattgaattgcactaactactcgtta 110  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  31321758 atggacttcaaatgtatatatgaaatcttgactataaaattaagaacataaaagtaatattgatgtattaatacaattgaattgcactaactactcgttg 31321857  T
Q  111 aaacgtcaatgtatgaatgaagtaaagaaaatttctagcaataaatgaattcaagctggctgagaaaaagaggacgagcttctaacaacatcaaccgatg 210  Q
    ||||   ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31321858 aaac---aatgtatgaatgaagtaaagaaaatttctggcaataaatgaattcaagctggctgagaaaaagaggacgagcttctagcaacatcaaccgatg 31321954  T
Q  211 tccaagaagatatactatgtacagaggttgataaaataaaaccaatcaaaagcaagtgtttttgctccttccttctcctacttctgaacaccataattat 310  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31321955 tccaagaagatatactatgtacaggggttgataaaataaaaccaatcaaaagcaagtgtttttgctccttccttctcctacttctgaacaccataattat 31322054  T
Q  311 cacaagaatacatcttcaacataacacttttcc---taatctccctatcaagcatctcctctatccaaccttgcctcaatttgttccacttattattctg 407  Q
    ||||| |||||||||||||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31322055 cacaaaaatacatcttcaacataacacttttccttattatctccctatcaagcatctcctctatccaaccttgcctcaatttgttccacttattgttctg 31322154  T
Q  408 ccataacaacaattgtaggattggtgttacgaatgagaaccaaaaagaaccatacttttgtggaaatcatgagaattttacagttttatgatc--tatat 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||    
T  31322155 ccataacaacaattgtaggattggtgttacgaatgagaaccaaaaagaaccatgcttttgtggaaatcatgagaattttacagttttatgatctatatat 31322254  T
Q  506 gtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatgg 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31322255 gtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgcgactaagataaaaataaaggaagaaagacacgaagaagatgg 31322350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 450 - 601
Target Start/End: Complemental strand, 31321447 - 31321296
Alignment:
Q  450 aaaagaaccatacttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggt 549  Q
    ||||||||||| |||||||| |||||| || ||||||| ||||||||||||||| |||||| || || ||||||||||||||||||||||| ||||||||    
T  31321447 aaaagaaccatgcttttgtgaaaatcacgaaaattttatagttttatgatctatctgtgaaattttaacagaaatggaggatatgggtagacgaaatggt 31321348  T
Q  550 gaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatgg 601  Q
    ||||||||| | ||||||| |||||| ||||||||||||| ||| |||||||    
T  31321347 gaaggtgtgcggctaagatgaaaatagaggaagaaagacaggaaaaagatgg 31321296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 480 - 589
Target Start/End: Complemental strand, 34650890 - 34650781
Alignment:
Q  480 gaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaagg 579  Q
    ||||||||| || |||||||| || | ||||||| ||||||||||  ||| ||||||||||||||||||||||| ||||  ||||| ||||||||| ||     
T  34650890 gaattttacggtattatgatcaatctatgaatttttagcagaaataaagggtatgggtagaagaaatggtgaagatgtgcaactaaaataaaaatagaga 34650791  T
Q  580 aagaaagaca 589  Q
    ||||||||||    
T  34650790 aagaaagaca 34650781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 5e-36; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 127 - 331
Target Start/End: Original strand, 42602016 - 42602213
Alignment:
Q  127 atgaagtaaagaaaatttctagcaataaatgaattcaagctggctgagaaaaagaggacgagcttctaacaacatcaaccgatgtccaagaagatatact 226  Q
    |||||||||||||||| | | ||||| ||||||||||||||||||||||||||||||| ||||||| | |||| |||| || |||||||||||  |||||    
T  42602016 atgaagtaaagaaaatctgtggcaatgaatgaattcaagctggctgagaaaaagaggatgagcttccagcaacgtcaatcggtgtccaagaag--atact 42602113  T
Q  227 atgtacagaggttgataaaataaaaccaatcaaaagcaagtgtttttgctccttccttctcctacttctgaacaccataattatcacaagaatacatctt 326  Q
     |||| ||||||||     || || |||| | |||| ||||| | |||||||||||| ||||| |||||||||||  |||||||||||||||||||| ||    
T  42602114 gtgtagagaggttg-----atcaagccaacccaaagtaagtgctgttgctccttcctgctcctgcttctgaacactgtaattatcacaagaatacatttt 42602208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 371 - 454
Target Start/End: Original strand, 42602474 - 42602557
Alignment:
Q  371 tccaaccttgcctcaatttgttccacttattattctgccataacaacaattgtaggattggtgttacgaatgagaaccaaaaag 454  Q
    ||||||||||||||| | |||||| ||| ||  |||||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  42602474 tccaaccttgcctcattgtgttccgcttcttgctctgccataacaacaattgtaggattggtgctacgaatgaggcccaaaaag 42602557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 490 - 601
Target Start/End: Original strand, 8332215 - 8332326
Alignment:
Q  490 gttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagaca 589  Q
    |||||||||  ||| ||||||||| ||||||||||||  ||||||| ||||||||||| |||| ||||| | ||||||| |||||| ||||||||| |      
T  8332215 gttttatgacatatttgtgaatttttagcagaaatggtcgatatggatagaagaaatgatgaaagtgtgtggctaagatgaaaatagaggaagaaaaatt 8332314  T
Q  590 cgaagaagatgg 601  Q
     |||||||||||    
T  8332315 ggaagaagatgg 8332326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 42601817 - 42601880
Alignment:
Q  38 cttgactataaaattaagaacataaagtaatattgatgtattaatacaattgaattgcactaactac 104  Q
    |||||||||||||||||||||| |||   |||||||||||||||||||| | |||||||||||||||    
T  42601817 cttgactataaaattaagaacagaaa---atattgatgtattaatacaaataaattgcactaactac 42601880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 521 - 602
Target Start/End: Complemental strand, 7491697 - 7491616
Alignment:
Q  521 aaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatggt 602  Q
    ||||| |||||||||||||||||||  |||||  |||| ||||||||| |||||   |||||||||| | ||||||||||||    
T  7491697 aaatgaaggatatgggtagaagaaactgtgaatatgtgcgactaagatgaaaatggtggaagaaagatatgaagaagatggt 7491616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 574
Target Start/End: Original strand, 7500711 - 7500784
Alignment:
Q  501 tatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaat 574  Q
    |||||||| |||| |||||  ||||||||||||||||||||||||| |||||  |||| | ||||||| |||||    
T  7500711 tatatgtggatttttagcatgaatggaggatatgggtagaagaaatagtgaatatgtgcggctaagatgaaaat 7500784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 602
Target Start/End: Original strand, 36139553 - 36139629
Alignment:
Q  526 gaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatggt 602  Q
    |||||||| | | ||||||||||||||  |||| ||||||||| |||||   |||||||||||| ||||||||||||    
T  36139553 gaggatatagattgaagaaatggtgaatatgtgcgactaagattaaaatggtggaagaaagacatgaagaagatggt 36139629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 574
Target Start/End: Original strand, 7492680 - 7492753
Alignment:
Q  501 tatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaat 574  Q
    |||||||| | || |||||  ||||||||||||||||||||||||| |||||  |||| | ||||||| |||||    
T  7492680 tatatgtggagttttagcatgaatggaggatatgggtagaagaaatagtgaatatgtgcggctaagatgaaaat 7492753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 602
Target Start/End: Complemental strand, 7499746 - 7499665
Alignment:
Q  521 aaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatggt 602  Q
    ||||| |||||||||||||||||||  |||||  |||| | || |||| |||||   |||||||||||| ||||||||||||    
T  7499746 aaatgaaggatatgggtagaagaaactgtgaatatgtgtggcttagatgaaaatggtggaagaaagacatgaagaagatggt 7499665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 449 - 588
Target Start/End: Complemental strand, 2687573 - 2687433
Alignment:
Q  449 aaaaagaaccatactttt-gtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatg 547  Q
    |||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||    |||||    
T  2687573 aaaaagaaccatgctttttgtgaaaatcatgggaattttacagttttatgatctatgtatgaatttttagcagaaatggaggatatgggtattgaaaatg 2687474  T
Q  548 gtgaaggtgtgggactaagataaaaataaaggaagaaagac 588  Q
    ||||||||||| | ||||||| |||||  | ||||||||||    
T  2687473 gtgaaggtgtgcggctaagatgaaaatggaagaagaaagac 2687433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 464 - 596
Target Start/End: Original strand, 27824119 - 27824251
Alignment:
Q  464 tttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggact 563  Q
    ||||| || ||||||||||||||| ||| ||||||||||| |||||||||  || |||| | || |||||| |||||| |||||||||| ||||| | |     
T  27824119 tttgtagatatcatgagaattttaaagtattatgatctatttgtgaattttcagtagaattcgaagatatgagtagaataaatggtgaatgtgtgcggca 27824218  T
Q  564 aagataaaaataaaggaagaaagacacgaagaa 596  Q
    |||||||||||  ||||| ||||||| ||||||    
T  27824219 aagataaaaatggaggaaaaaagacatgaagaa 27824251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 501 - 553
Target Start/End: Original strand, 27166985 - 27167037
Alignment:
Q  501 tatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaag 553  Q
    ||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  27166985 tatatatgaatttttagcataaatggaagatatgggtagaagaaatggtgaag 27167037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 552
Target Start/End: Complemental strand, 17097389 - 17097344
Alignment:
Q  507 tgaatttatagcagaaatggaggatatgggtagaagaaatggtgaa 552  Q
    ||||||| |||||  |||||||||||||||||||||||||| ||||    
T  17097389 tgaatttttagcatgaatggaggatatgggtagaagaaatgttgaa 17097344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 473 - 592
Target Start/End: Original strand, 13163522 - 13163640
Alignment:
Q  473 atcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaa 572  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||||| | ||||||||||| ||||||| |||| ||||||||||| |  |||| | |||    
T  13163522 atcatgtgaattttaaagttttatgatctatatgtgaatttttagcaaatatggaggatataggtagaa-aaattgtgaaggtgtgcggttaagttgaaa 13163620  T
Q  573 ataaaggaagaaagacacga 592  Q
    || |||||||||||||||||    
T  13163621 atgaaggaagaaagacacga 13163640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 471 - 601
Target Start/End: Complemental strand, 38997722 - 38997591
Alignment:
Q  471 aaatcatgagaattttacagttttatgatctatatgtgaatttat-agcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagata 569  Q
    |||||||  |||||| ||| ||||||||||||||||||| ||| | ||||||||| |||||||| |||||||||||||||||| ||||| |||||||||     
T  38997722 aaatcatcggaatttgacaattttatgatctatatgtgatttttttagcagaaatcgaggatataggtagaagaaatggtgaatgtgtgcgactaagatg 38997623  T
Q  570 aaaataaaggaagaaagacacgaagaagatgg 601  Q
    |||||  ||||||||| ||| ||| |||||||    
T  38997622 aaaatggaggaagaaaaacaggaaaaagatgg 38997591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 450 - 552
Target Start/End: Original strand, 37498509 - 37498611
Alignment:
Q  450 aaaagaaccatacttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggt 549  Q
    ||||||| |||  ||||||| |||||||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||| || | |||||||||||||    
T  37498509 aaaagaagcatgtttttgtgaaaatcatgggaattttacagttttatgatctatttgtgaatttttagcataaatggaggacatagctagaagaaatggt 37498608  T
Q  550 gaa 552  Q
    |||    
T  37498609 gaa 37498611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 37497958 - 37498026
Alignment:
Q  19 tcaaatgtatatat-gaaatcttgactataaaattaagaacataaagtaatattgatgtattaatacaa 86  Q
    |||||||||||| | ||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  37497958 tcaaatgtatatctagaaatcttgactataaaattaagaacagaaagtaatattggtgtattaatacaa 37498026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 495 - 601
Target Start/End: Complemental strand, 28804111 - 28804006
Alignment:
Q  495 atgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaag 594  Q
    ||||||| | ||||||||| |  ||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||  | ||||||||| | |||     
T  28804111 atgatctctttgtgaatttttgacagaaatgg-ggatatgggtagaagaaatggtgaaggtgtgcgactaagatgaaaattgacgaagaaagataggaaa 28804013  T
Q  595 aagatgg 601  Q
    |||||||    
T  28804012 aagatgg 28804006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 584
Target Start/End: Complemental strand, 37497596 - 37497494
Alignment:
Q  481 aattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaagga 580  Q
    |||||||| | ||||||||||||  ||||| || ||||| ||||||| ||||||| |||||||||||||||| |||||  |||||||| |||||  ||||    
T  37497596 aattttacggctttatgatctatcggtgaaatt-tagcataaatggatgatatggatagaagaaatggtgaaagtgtgcaactaagatgaaaatggagga 37497498  T
Q  581 agaa 584  Q
    ||||    
T  37497497 agaa 37497494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 449 - 585
Target Start/End: Original strand, 28636113 - 28636250
Alignment:
Q  449 aaaaagaaccatacttttgtggaaatcatgagaattttacagttttatgatctatatg--tgaatttatagcagaaatggaggatatgggtagaagaaat 546  Q
    ||||| ||| |||||||||||||||||||| |||||||| ||||||||||| ||| |   |   ||| ||||| ||||||||||| |||||| |||||||    
T  28636113 aaaaaaaactatacttttgtggaaatcatgggaattttatagttttatgatttatgttattttttttttagcaaaaatggaggat-tgggtaaaagaaat 28636211  T
Q  547 ggtgaaggtgtgggactaagataaaaataaaggaagaaa 585  Q
    |||||||||||| ||||||||| |||||  |||||||||    
T  28636212 ggtgaaggtgtgagactaagatgaaaatggaggaagaaa 28636250  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 489 - 558
Target Start/End: Complemental strand, 3697944 - 3697875
Alignment:
Q  489 agttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtg 558  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |||| |||||||||||    
T  3697944 agttttatgatctatctgtgaatttttagcagaaatggacgatatgggtagaataaatagtgaaggtgtg 3697875  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 459 - 574
Target Start/End: Complemental strand, 28686870 - 28686756
Alignment:
Q  459 atacttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtg 558  Q
    ||||||||| ||||||||||  |||||||||||||||||||| || || ||||||  |||  |||||| ||||||| ||||||| |||| ||||||||||    
T  28686870 atacttttgaggaaatcatggaaattttacagttttatgatccatctgcgaattttcagctaaaatgggggatatgagtagaag-aatgatgaaggtgtg 28686772  T
Q  559 ggactaagataaaaat 574  Q
       |||||||||||||    
T  28686771 ctgctaagataaaaat 28686756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 601
Target Start/End: Original strand, 35711282 - 35711376
Alignment:
Q  507 tgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatgg 601  Q
    ||||||| |||||||||||||||| |||| ||||||||| ||||||||| ||    |||| | ||||   ||||||||||||| |||||||||||    
T  35711282 tgaatttttagcagaaatggaggaaatggatagaagaaacggtgaaggtatgcaggtaagttgaaaagggaggaagaaagacatgaagaagatgg 35711376  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 601
Target Start/End: Complemental strand, 3704782 - 3704710
Alignment:
Q  529 gatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatgg 601  Q
    ||||||||||||||||||| ||||||||||  ||||||    ||||  ||||||||||||| |||||||||||    
T  3704782 gatatgggtagaagaaatgctgaaggtgtgcaactaagggggaaatggaggaagaaagacatgaagaagatgg 3704710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 521 - 601
Target Start/End: Original strand, 39705007 - 39705087
Alignment:
Q  521 aaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatgg 601  Q
    |||||||| ||||||||| |||||||||||||  |||| | | ||||| |||||   |||||||||||| ||||| |||||    
T  39705007 aaatggagaatatgggtataagaaatggtgaatatgtgcggccaagatgaaaatggtggaagaaagacatgaagaggatgg 39705087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 450 - 601
Target Start/End: Complemental strand, 12028538 - 12028394
Alignment:
Q  450 aaaagaaccatacttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggt 549  Q
    |||||||||||  |||||||||||||||  ||||||||||      |||||||| ||| ||||| ||||||||||||||||||||  || |||||||  |    
T  12028538 aaaagaaccatgtttttgtggaaatcatatgaattttaca------tgatctatttgtaaatttttagcagaaatggaggatatgtttataagaaataat 12028445  T
Q  550 gaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatgg 601  Q
     |||||||| | ||||||| |||||  | | ||||||||| |||||||||||    
T  12028444 aaaggtgtgcggctaagatgaaaatgga-gtagaaagacatgaagaagatgg 12028394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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