View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10381_low_22 (Length: 240)
Name: NF10381_low_22
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10381_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 24541612 - 24541835
Alignment:
| Q |
1 |
ttaatgcccaaattcattgaactttatttgaatttaaggggaaaattaacttgtttctctttattcatgcttgttagtgcaagacataaggagaaatttg |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24541612 |
ttaatgaccaaattcattgaactttatttgaatttaaggggaaaaataacttgtttctctttattcatgcttgttagtgcaagacataaggagaaatttg |
24541711 |
T |
|
| Q |
101 |
ggaagggttcaagggaatactgaagtgtaggaaactagttttgagtaccagggagagtatacgtttcttattttttaaaggaagcgtatacatatggtat |
200 |
Q |
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| T |
24541712 |
ggaagggttcaagggaatactgaagtgtagtaaactagttttgagtaccggggagagtatacgttttttattttttaaaggaagcgtatacatatggtat |
24541811 |
T |
|
| Q |
201 |
ggtatatatttacactctaataaa |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
24541812 |
ggtatatatttacactctaataaa |
24541835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 20963679 - 20963448
Alignment:
| Q |
4 |
atgcccaaattcattgaactttatttgaatttaaggggaaaattaacttgtttctctttattcatgcttgttagtgcaagacataaggagaaatttggga |
103 |
Q |
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| T |
20963679 |
atgcccaaatttattgaaatttatttgaatttaaggggcaaattaaactgtttccttttattcatgcttgttagtgcaagacataaagagaaatttggga |
20963580 |
T |
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| Q |
104 |
a-gggttcaagggaat-----actgaagtgtaggaaactag-ttttgagtaccagggagagtatacgtttcttattttttaaaggaagcg----tataca |
192 |
Q |
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| T |
20963579 |
aggggatcaagggaatactgaactgaagtgtaggaaacttgtttttgagcaccagtaagaatacatctatatattttttttaaggaagggggaatatacg |
20963480 |
T |
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| Q |
193 |
tatggtatggtatatatttacactctaataaa |
224 |
Q |
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| T |
20963479 |
tatggtatggtatatatttacactctaataaa |
20963448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 3176419 - 3176505
Alignment:
| Q |
9 |
caaattcattgaactttatttgaatttaaggggaaaattaacttgtttctctttattcatgcttgttagtgcaagacataaggagaaat |
97 |
Q |
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| T |
3176419 |
caaattcaatgagctttatttgaatttaagggacaaattaaattgt--ctctttattcatgcttgttagtgcaagacatcaggagaaat |
3176505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 14675426 - 14675523
Alignment:
| Q |
1 |
ttaatgcccaaattcattgaactttatttgaatttaaggggaaaattaacttgtttctctttattcatgcttgttagtgcaagacataaggagaaatttg |
100 |
Q |
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|||||| |||| |||||| | ||||| ||||||||||| |||||||||| ||||| |||||||| || ||||||||| |||| ||| ||||||||||| |
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| T |
14675426 |
ttaatgtccaatttcattaagctttaattgaatttaagaggaaaattaaattgtt--tctttatttattcttgttagttcaaggtatatggagaaatttg |
14675523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 14678442 - 14678483
Alignment:
| Q |
109 |
tcaagggaatactgaagtgtaggaaactagttttgagtacca |
150 |
Q |
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| T |
14678442 |
tcaagggaatactgaaatgtaggaaactagtttagagcacca |
14678483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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