View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10381_low_24 (Length: 238)
Name: NF10381_low_24
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10381_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40595238 - 40595016
Alignment:
| Q |
1 |
actaggtgtgatgaattggtcatgttaagtcaaagtaattttattggtttgaacctaattttatttgattcttgtgattatgctaatgatagttatcann |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40595238 |
actaggtgtgatgaattggtcatgttaagtcaaagtaattttattggtttgaacctaattttatttgattcttgtgattatgctaatgatagttatcatt |
40595139 |
T |
|
| Q |
101 |
nnnnncgttaattgtcttcaaagattggttttgacactgttttgccgggatatgtgtaataggttaacaagcgatacaagcagtaccatcaacaaatgca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40595138 |
tttttcgttaattgtcttcaaagattggttttgacactgttttgccgggatatgtgtaataggttaacaagcgatacaagcagtaccatcaacaaatgca |
40595039 |
T |
|
| Q |
201 |
aatggttttttcatcctttgaat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
40595038 |
aatggttttttcatcctttgaat |
40595016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University