View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10381_low_26 (Length: 233)
Name: NF10381_low_26
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10381_low_26 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 14588871 - 14588643
Alignment:
| Q |
5 |
cataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14588871 |
cataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaa |
14588772 |
T |
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| Q |
105 |
agaaaaaggtcaacacttgcgtatagtttgtcggcatcaaaacgagtaaattttcttccagaatcattcttcatagccgactgtattctcataatctcgt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| ||| |||||||||||||||| ||||| |
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| T |
14588771 |
agaaaaaggtcaacacttgcgtatagtttgtcggcatcagaacgactaaattttcttccataatcattcttcacagctgactgtattctcataacctcgt |
14588672 |
T |
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| Q |
205 |
aacgtttgagatgaatggttgtttggaaa |
233 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
14588671 |
aacgtttgagatgaatggttgtttggaaa |
14588643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 14622529 - 14622301
Alignment:
| Q |
5 |
cataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14622529 |
cataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaa |
14622430 |
T |
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| Q |
105 |
agaaaaaggtcaacacttgcgtatagtttgtcggcatcaaaacgagtaaattttcttccagaatcattcttcatagccgactgtattctcataatctcgt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| || |||||||||||||||| ||||| |
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| T |
14622429 |
agaaaaaggtcaacacttgcgtatagtttgtcggcatcagaacgactaaattttcttccataatcattcttcacagttgactgtattctcataacctcgt |
14622330 |
T |
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| Q |
205 |
aacgtttgagatgaatggttgtttggaaa |
233 |
Q |
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| T |
14622329 |
aacgtttgagatgaatggttgtttggaaa |
14622301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 12846426 - 12846329
Alignment:
| Q |
5 |
cataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctga |
102 |
Q |
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||||| |||||||||||| || || |||| |||||| |||||||||| ||||| |||||||| |||||||||| |||||| ||||| || ||||||| |
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| T |
12846426 |
catagatggtggaagcaacccaacaagaacgacaggagccttgtattgttcagagatataatccaaccattcactttcaagctctcttgatgttctga |
12846329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 29954442 - 29954317
Alignment:
| Q |
11 |
tggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaaagaaaa |
110 |
Q |
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||||||||||| ||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
29954442 |
tggtggaagcattccaactggaaccacaggaactttgtattggtaagaaatataatctaaccattcaccttcaagttctctagaggttcttataagaaaa |
29954343 |
T |
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| Q |
111 |
aggtcaacacttgcgtatagtttgtc |
136 |
Q |
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|||||| ||||| ||||| |||||| |
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| T |
29954342 |
aggtcacaacttgagtatactttgtc |
29954317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 51370011 - 51370123
Alignment:
| Q |
11 |
tggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaaagaaaa |
110 |
Q |
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||||||||| | ||| || |||| |||||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||||||||| | |||||| |
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| T |
51370011 |
tggtggaagaactccaacaggaagcacaggaaccttgtatcggtgagaaagataatctaaccatggaccttcaagttctctagaggttctaataagaaac |
51370110 |
T |
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| Q |
111 |
aggtcaacacttg |
123 |
Q |
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| |||| |||||| |
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| T |
51370111 |
atgtcagcacttg |
51370123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 1361798 - 1361691
Alignment:
| Q |
5 |
cataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaa |
104 |
Q |
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||||| |||||||||||| || || ||||| |||||||||||||| || ||||| |||||||| ||||||||||||||||||||||| |||||||||| | |
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| T |
1361798 |
catagatggtggaagcaacccaacaggaacgacaggaaccttgtactgttcagagatataatccaaccattcaccttcaagttctcttgaggttctgaga |
1361699 |
T |
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| Q |
105 |
agaaaaag |
112 |
Q |
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|||||||| |
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| T |
1361698 |
agaaaaag |
1361691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 20492577 - 20492472
Alignment:
| Q |
11 |
tggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaaagaaaa |
110 |
Q |
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||||||||| | ||| || ||||||||||||||||||||| | || ||||||||||||||||||| ||||||||||||||||| || ||||| ||||| | |
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| T |
20492577 |
tggtggaagtattccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggctctgataagaata |
20492478 |
T |
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| Q |
111 |
aggtca |
116 |
Q |
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|||||| |
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| T |
20492477 |
aggtca |
20492472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 1354905 - 1354805
Alignment:
| Q |
12 |
ggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaaagaaaaa |
111 |
Q |
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||||||| ||| || || ||||| |||||||| ||||| || ||||| |||||||| ||||||||||||||||| ||||| |||||||||| ||| |||| |
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| T |
1354905 |
ggtggaatcaacccaacaggaacaacaggaacattgtactgttcagagatataatccaaccattcaccttcaagctctctcgaggttctgagaagtaaaa |
1354806 |
T |
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| Q |
112 |
g |
112 |
Q |
| |
|
| |
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| T |
1354805 |
g |
1354805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 11531756 - 11531651
Alignment:
| Q |
11 |
tggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaaagaaaa |
110 |
Q |
| |
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||||||||||||||| || ||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| || || |||||| ||||||| |
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| T |
11531756 |
tggtggaagcaatccaactggaaccacacgaaccttatattggctagaaatataatctaaccattcaccttcaagttctttacagcttctgataagaaaa |
11531657 |
T |
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| Q |
111 |
aggtca |
116 |
Q |
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| |||| |
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| T |
11531656 |
atgtca |
11531651 |
T |
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