View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10381_low_28 (Length: 225)
Name: NF10381_low_28
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10381_low_28 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 3343912 - 3344141
Alignment:
| Q |
1 |
gttccttcttgttggagatattttatagtagcttcactcacaagatcatcaagtgcatcaaatattactttgctgtggctgcttaggcctatggcatccc |
100 |
Q |
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| T |
3343912 |
gttccttcttgttggagatattttatagtagcttcactcacaagatcatcaagtgcatcaaatattactttgctgtggctgcttaggcctatggcatccc |
3344011 |
T |
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| Q |
101 |
atctattatttcaaaaagaatgaacatatatgaaagagatttaacattttgaagaaccacatcttgagtttttagact-----atttgtgtgtttcacta |
195 |
Q |
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| T |
3344012 |
atctattatttcaaaaagaatgagcttacatgaaagagatttaacattttgaagaaccacatcttgagtttttagactatttaatttgtgtgtttgacta |
3344111 |
T |
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| Q |
196 |
aacaacttaattaagtaattttcattattt |
225 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3344112 |
aacaacttaattaagtaattttcattattt |
3344141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 3369121 - 3369274
Alignment:
| Q |
1 |
gttccttcttgttggagatattttatagtagcttcactcacaagatcatcaagtgcatcaaatattactttgctgtggctgcttaggcctatggcatccc |
100 |
Q |
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|||||||||||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | | ||||| |
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| T |
3369121 |
gttccttcttgttggagataatttctagaagcttcactcacaagattatcaagtgcatcaaatataactttgctgtggctgcttaggcctcttgtatccc |
3369220 |
T |
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| Q |
101 |
atctattatttcaaaaagaatgaacatatatgaaaga-gatttaacattttgaa |
153 |
Q |
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||||| |||||||||||||| || | || ||||| || | |||||||||||||| |
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| T |
3369221 |
atctactatttcaaaaagaaagagcttacatgaatgaggttttaacattttgaa |
3369274 |
T |
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