View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10381_low_29 (Length: 225)

Name: NF10381_low_29
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10381_low_29
NF10381_low_29
[»] scaffold0144 (1 HSPs)
scaffold0144 (1-225)||(37129-37353)
[»] chr6 (11 HSPs)
chr6 (1-225)||(16657651-16657875)
chr6 (4-225)||(16868301-16868522)
chr6 (13-225)||(16780738-16780950)
chr6 (1-225)||(17069145-17069369)
chr6 (1-225)||(16787606-16787830)
chr6 (1-225)||(16796808-16797032)
chr6 (1-225)||(16987093-16987317)
chr6 (51-184)||(18806544-18806677)
chr6 (51-184)||(18873538-18873671)
chr6 (86-217)||(16843453-16843584)
chr6 (104-184)||(18870507-18870587)
[»] chr3 (2 HSPs)
chr3 (13-225)||(38939669-38939881)
chr3 (21-218)||(7053584-7053781)
[»] chr8 (1 HSPs)
chr8 (13-225)||(13377731-13377942)
[»] scaffold0256 (1 HSPs)
scaffold0256 (13-225)||(8790-9002)
[»] scaffold0133 (3 HSPs)
scaffold0133 (1-225)||(12488-12712)
scaffold0133 (13-225)||(17694-17906)
scaffold0133 (1-225)||(8146-8370)
[»] scaffold0511 (1 HSPs)
scaffold0511 (51-184)||(9033-9166)
[»] scaffold0230 (1 HSPs)
scaffold0230 (51-184)||(4352-4485)


Alignment Details
Target: scaffold0144 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 37353 - 37129
Alignment:
Q  1 gatttctgtggtggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37353 gatttctgtggtggaaagtgagttttggaatttagctgatgataaccaagtcatgtctgctttgagactgagctactttaacttgaaattgtcattgagg 37254  T
Q  101 ccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggacttgttacatctagag 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  37253 ccatgttttactttttgtgctgtttttcctaaggattttaaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttgcatctagag 37154  T
Q  201 gaaacttacagatggagcatgttgg 225  Q
    |||||||||||||||||||||||||    
T  37153 gaaacttacagatggagcatgttgg 37129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16657875 - 16657651
Alignment:
Q  1 gatttctgtggtggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16657875 gatttctgtggtggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgagg 16657776  T
Q  101 ccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggacttgttacatctagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  16657775 ccatgttttactttttgtgctgtttttcctaaggattttgaaatggataaggaagaactcattaaactttggatggctaatggacttgttatatctagag 16657676  T
Q  201 gaaacttacagatggagcatgttgg 225  Q
    |||||||||||||||||||||||||    
T  16657675 gaaacttacagatggagcatgttgg 16657651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 16868301 - 16868522
Alignment:
Q  4 ttctgtggtggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggcca 103  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16868301 ttctgtggtggaaagtgagttttggaatttagcagatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggcca 16868400  T
Q  104 tgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggacttgttacatctagaggaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||  | |||||||||||||||||||||||||||||||||||||||||||||    
T  16868401 tgttttactttttgtgctgtttttcctaaggattttgaaatggaaaaggaatttttcattcaactttggatggctaatggacttgttacatctagaggaa 16868500  T
Q  204 acttacagatggagcatgttgg 225  Q
    ||||||||||||||||||||||    
T  16868501 acttacagatggagcatgttgg 16868522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 16780950 - 16780738
Alignment:
Q  13 ggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttact 112  Q
    |||||||||| ||||||| ||| |||| ||||||| | ||||||||||||||||||| ||||||||||| ||||| ||||| || ||||| |||||||||    
T  16780950 ggaaagtgagctttggaagttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaatttgtccttaaggccgtgttttact 16780851  T
Q  113 ttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggacttgttacatctagaggaaacttacaga 212  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16780850 ttttgtgctgtttttcctaaggattttgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttacatctagaggaaacttacaga 16780751  T
Q  213 tggagcatgttgg 225  Q
    |||||||||||||    
T  16780750 tggagcatgttgg 16780738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 17069369 - 17069145
Alignment:
Q  1 gatttctgtggtggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgagg 100  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  17069369 gatttctgtggtggaaagtgagttttggaatttagacgatgagaaccctgtcatgtctgctttgagactaagctactataacttgaaattgtcattgagg 17069270  T
Q  101 ccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggacttgttacatctagag 200  Q
    |||||||||||||| |||| |||||||||||||||||||| |||||||||||||   |||||||| |||||||||||||||||| |||||||||||||||    
T  17069269 ccatgttttactttctgtgttgtttttcctaaggattttgtaatggtgaaggaaaggctcattcatctttggatggctaatggatttgttacatctagag 17069170  T
Q  201 gaaacttacagatggagcatgttgg 225  Q
    | || ||||||||||||||||||||    
T  17069169 gtaatttacagatggagcatgttgg 17069145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16787830 - 16787606
Alignment:
Q  1 gatttctgtggtggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgagg 100  Q
    |||||||||  ||||||||||||||||||||||| |||| ||| | | | ||||||||| ||||||||| ||||||||||||||||||||||| ||||||    
T  16787830 gatttctgtactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtccttgagg 16787731  T
Q  101 ccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggacttgttacatctagag 200  Q
    ||||||||||| || || ||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  16787730 ccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacatctagag 16787631  T
Q  201 gaaacttacagatggagcatgttgg 225  Q
    ||||||||||||||||| |||||||    
T  16787630 gaaacttacagatggaggatgttgg 16787606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16797032 - 16796808
Alignment:
Q  1 gatttctgtggtggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgagg 100  Q
    |||||||||  |||||||||| |||||||||||| || | | | | | | ||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  16797032 gatttctgtactggaaagtgaattttggaatttacctcaggttgatcgtatcatgtctgctttgacactaagctactttaacttgaaattgtcattgagg 16796933  T
Q  101 ccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggacttgttacatctagag 200  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  16796932 ccatgttttactttctgcgctgtttttcctaaggattttgaaatggtgaaggaacatctcattcatctttggatggctaatggacttgttacatctagag 16796833  T
Q  201 gaaacttacagatggagcatgttgg 225  Q
    | || ||||||||||||||||||||    
T  16796832 gtaatttacagatggagcatgttgg 16796808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16987317 - 16987093
Alignment:
Q  1 gatttctgtggtggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgagg 100  Q
    |||||||||  ||||||||||| ||||||||||| |||| ||| | | | |||| |||||||||||||| |||||||| ||| ||||||||||| | |||    
T  16987317 gatttctgtactggaaagtgagatttggaatttacctgaggatgatcctatcatttctgctttgagactaagctacttcaacatgaaattgtcactaagg 16987218  T
Q  101 ccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggacttgttacatctagag 200  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16987217 ccatgttttaccttctgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcatctttggatggctaatggacttgttacatctagag 16987118  T
Q  201 gaaacttacagatggagcatgttgg 225  Q
    | || ||||||||||||||||||||    
T  16987117 gtaatttacagatggagcatgttgg 16987093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 18806544 - 18806677
Alignment:
Q  51 tcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaa 150  Q
    ||||||||| ||||||||| ||||||||||| |||||||| ||| ||||||  ||||||||||||||||| |||||||||||||||||||||||||||||    
T  18806544 tcatgtctgttttgagactcagctactttaatttgaaattatcactgaggctgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaa 18806643  T
Q  151 ggaagatctcattcaactttggatggctaatgga 184  Q
    |||||| || || || |||||| |||||||||||    
T  18806644 ggaagaactgatccatctttggttggctaatgga 18806677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 18873538 - 18873671
Alignment:
Q  51 tcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaa 150  Q
    |||||||||  |||||||| ||||||||||| |||||||| ||| ||||||  ||||||||||||||||| |||||||||||||||||||||||||||||    
T  18873538 tcatgtctgtattgagactcagctactttaatttgaaattatcactgaggctgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaa 18873637  T
Q  151 ggaagatctcattcaactttggatggctaatgga 184  Q
    |||||| || || || |||||| |||||||||||    
T  18873638 ggaagaactgatccatctttggttggctaatgga 18873671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 16843584 - 16843453
Alignment:
Q  86 aaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggac 185  Q
    ||||| ||||||| |||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||| | ||||| ||||||||||| ||||||     
T  16843584 aaattatcattgaagccatgttttacattttgtgctgtatttcctaaagattttgtaatggtgaaggaagatgtaattcatctttggatggcaaatggat 16843485  T
Q  186 ttgttacatctagaggaaacttacagatggag 217  Q
    || || | || |||||||| ||| ||||||||    
T  16843484 ttatttcctccagaggaaatttagagatggag 16843453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 18870507 - 18870587
Alignment:
Q  104 tgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatgga 184  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||||||||| || || || |||||| || ||||||||    
T  18870507 tgttttaccttttgtgaggtttttcctaaggattttgaaatggtgaaggaagaactgatccatctttggttgactaatgga 18870587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 38939669 - 38939881
Alignment:
Q  13 ggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttact 112  Q
    |||||||||| ||||||||||| |||| ||||||| | ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| |    
T  38939669 ggaaagtgagctttggaatttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattgtccttgaggccatgttttaat 38939768  T
Q  113 ttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggacttgttacatctagaggaaacttacaga 212  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38939769 ttttgtgctgtttttcctaaggattttgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttacatcaagaggaaacttacaga 38939868  T
Q  213 tggagcatgttgg 225  Q
    |||||||||||||    
T  38939869 tggagcatgttgg 38939881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 7053584 - 7053781
Alignment:
Q  21 agttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgc 120  Q
    |||||||||||||| |||| ||||| |   |||||||||||||||| |||||||||| ||| ||||||||| |||||||||| |||||| ||||||||||    
T  7053584 agttttggaatttatctgaggataatccaatcatgtctgctttgaggctgagctactataatttgaaattgccattgaggccttgtttttctttttgtgc 7053683  T
Q  121 tgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggacttgttacatctagaggaaacttacagatggagc 218  Q
    ||||||||| || |||||||| ||    ||||||   |||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  7053684 tgtttttcccaaagattttgagatacataaggaatgcctcattcatctttggatggctaatggacttcttacatctagaggaaatttacagatggagc 7053781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 13377942 - 13377731
Alignment:
Q  13 ggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttact 112  Q
    ||||||| || ||||||||||| |||| ||||||| | ||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  13377942 ggaaagtaagctttggaatttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattgtccttgaggccatgttttact 13377843  T
Q  113 ttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggacttgttacatctagaggaaacttacaga 212  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  13377842 ttttgtgctgtttttcctaaggattttgaaatggtgaaggaaaatctcattctactttggatggctaatggacttgttacatctagaggaaacttaca-a 13377744  T
Q  213 tggagcatgttgg 225  Q
     ||||||||||||    
T  13377743 cggagcatgttgg 13377731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 9002 - 8790
Alignment:
Q  13 ggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttact 112  Q
    |||||||||| ||||||||||| |||| ||| | | | ||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||    
T  9002 ggaaagtgagctttggaatttaactgaggatgatcctatcatgtctgctttgagactaagctactttaatttgaaattgtccttgagaccatgttttact 8903  T
Q  113 ttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggacttgttacatctagaggaaacttacaga 212  Q
    |||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8902 ttttgtgctgtttttcctaaagattttaaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttacatctagaggaaatttacaga 8803  T
Q  213 tggagcatgttgg 225  Q
    |||||||||||||    
T  8802 tggagcatgttgg 8790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 12712 - 12488
Alignment:
Q  1 gatttctgtggtggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgagg 100  Q
    |||||||||  | |||||||||||||||| |||| |||| | | | | | ||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  12712 gatttctgtactagaaagtgagttttggagtttacctgaggttgatcctatcatgtctgctttgagactaagctattttaacttgaaattgtcattgagg 12613  T
Q  101 ccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggacttgttacatctagag 200  Q
    |||||||||||||| |||||||||||||| || |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12612 ccatgttttactttctgtgctgtttttcccaaagattatgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttacatctagag 12513  T
Q  201 gaaacttacagatggagcatgttgg 225  Q
    |||||||||||||||||||||||||    
T  12512 gaaacttacagatggagcatgttgg 12488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 17906 - 17694
Alignment:
Q  13 ggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttact 112  Q
    |||||||||| ||||||||||| |||| ||||||| | | ||||||||||||||||| ||||||||||| ||||||| ||| |||||||| |||||||||    
T  17906 ggaaagtgaggtttggaatttatctgaggataaccctataatgtctgctttgagactaagctactttaatttgaaatcgtccttgaggccctgttttact 17807  T
Q  113 ttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggacttgttacatctagaggaaacttacaga 212  Q
    |||||| ||||||||||||||||||||||||||||||||||| || |||||| | |||||||||||||||||||||||||||| ||||||||||||||||    
T  17806 ttttgtactgtttttcctaaggattttgaaatggtgaaggaaaatatcattccattttggatggctaatggacttgttacatcaagaggaaacttacaga 17707  T
Q  213 tggagcatgttgg 225  Q
    |||||||||||||    
T  17706 tggagcatgttgg 17694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8370 - 8146
Alignment:
Q  1 gatttctgtggtggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgagg 100  Q
    |||||||||  |||||||||| |||||||||||  |||| | | |   | ||||||||||||||||| | |||||||||||||||||||||||||||||     
T  8370 gatttctgtactggaaagtgaattttggaatttgcctgaggttgattctatcatgtctgctttgagaataagctactttaacttgaaattgtcattgaga 8271  T
Q  101 ccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcaactttggatggctaatggacttgttacatctagag 200  Q
    ||||||||| |||| ||||||||||||||||||| |||||||||||| |||||| |||||||||| ||||||||||||||||| ||||||||||||||||    
T  8270 ccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaaaatctcattcatctttggatggctaatggtcttgttacatctagag 8171  T
Q  201 gaaacttacagatggagcatgttgg 225  Q
    |||| |||||||||||||| |||||    
T  8170 gaaatttacagatggagcacgttgg 8146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 9166 - 9033
Alignment:
Q  51 tcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaa 150  Q
    ||||||||| ||||||||| ||||||||||| |||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  9166 tcatgtctgttttgagactcagctactttaatttgaaattatcactgaggccgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaa 9067  T
Q  151 ggaagatctcattcaactttggatggctaatgga 184  Q
    |||||  || || || |||||| |||||||||||    
T  9066 ggaagcactgatccatctttggttggctaatgga 9033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 4485 - 4352
Alignment:
Q  51 tcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaa 150  Q
    |||||| || ||||||||| ||||||||||| || ||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  4485 tcatgtttgttttgagactcagctactttaatttaaaattatcactgaggccgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaa 4386  T
Q  151 ggaagatctcattcaactttggatggctaatgga 184  Q
    |||||| || || || |||||| |||||||||||    
T  4385 ggaagaactgatccatctttggttggctaatgga 4352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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