View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10381_low_30 (Length: 221)
Name: NF10381_low_30
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10381_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 10011346 - 10011154
Alignment:
| Q |
13 |
atgaatttgatgtccaactcttctaaatcatttttgtctcccttcgaaaaaggaaagnnnnnnnnctcgtctgcttcagaaacgagaaagaatatagaac |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10011346 |
atgaatttgatgtccaactcttctaaatcatttatgtctcccttcgaaaaaggaaagaaaaataactcttctgcttcagaaacgagaaagaatatagaac |
10011247 |
T |
|
| Q |
113 |
aaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctcttctatatt-ttttcataggttcgattggtct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10011246 |
aaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctcttctatatttttttcataggttcgattggtct |
10011154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 561652 - 561565
Alignment:
| Q |
88 |
tcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctctt |
175 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||| |||||||| ||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
561652 |
tcagaaacgagaaagaatatagaagaaaaggacaattttgaaggaaaaaatttgatgtccaattctccaaaacaggaacacctctctt |
561565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 17688782 - 17688904
Alignment:
| Q |
88 |
tcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctct-------tctata |
180 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |||||| ||||| ||| ||||| ||||||||||||||||| ||||||||| | |||| |
|
|
| T |
17688782 |
tcagaaacgagaaagaatatagaagaaaaggacaa-ttttaaagaaaaaatttgatgtctaattctccaaaacaggaacacctctcttatcttatgtata |
17688880 |
T |
|
| Q |
181 |
ttttttcataggttcgattggtct |
204 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
17688881 |
ttttttcttaggttcgattggtct |
17688904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 1678954 - 1678832
Alignment:
| Q |
88 |
tcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctct-------tctata |
180 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||| || ||||| ||| ||||| ||||||||||||||||| ||||||||| | |||| |
|
|
| T |
1678954 |
tcagaaacgagaaagaatatagaagaaaaggacaattttgaa-gaaaaaatttgatgtctaattctccaaaacaggaacacctctcttatcttatgtata |
1678856 |
T |
|
| Q |
181 |
ttttttcataggttcgattggtct |
204 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
1678855 |
ttttttcttaggttcgattggtct |
1678832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University