View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10381_low_31 (Length: 218)
Name: NF10381_low_31
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10381_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 62 - 200
Target Start/End: Original strand, 2243739 - 2243877
Alignment:
| Q |
62 |
tcactgtataattagaaagtacttacacataacagttttaaacagcgcaccaaaaagtagttataattcctatccttttctaacctgacacacggaacaa |
161 |
Q |
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| T |
2243739 |
tcactgtataattagaaagtacttacacataacagttttaaacagcgcaccaaaaagtagttataattcctatccttttctaacctgacacacggaacaa |
2243838 |
T |
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| Q |
162 |
agaaaggaaataagtaacaccaagtttaaacaaaaaggc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
2243839 |
agaaaggaaataagtaacaccaagtttaaacaaaaaggc |
2243877 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 2243691 - 2243722
Alignment:
| Q |
14 |
cataggtagtatattataagccataactttgc |
45 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2243691 |
cataggtagtatattataagccataactttgc |
2243722 |
T |
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