View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10381_low_6 (Length: 432)
Name: NF10381_low_6
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10381_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 5446111 - 5445705
Alignment:
| Q |
18 |
tttacctcaaccaaacacttctccacagtctccatgcactttttgaacaaatccttgtttatttcctcaaagaaagctctagtaacagtgaaatgtagat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446111 |
tttacctcaaccaaacacttctccacagtctccatgcactttttgaacaaatccttgtttatttcctcaaagaaagctctagtaacagtgaaatgtagat |
5446012 |
T |
|
| Q |
118 |
caatccctccacatagagaatcaagctcaataactgtttgtgaagatgaagaaagtaacctctttgctttctcacatgctgatcttaacctccccaaagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446011 |
caatccctccacatagagaatcaagctcaataactgtttgtgaagatgaagaaagtaacctctttgctttctcacatgctgatcttaacctccccaaagc |
5445912 |
T |
|
| Q |
218 |
tttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445911 |
tttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaa |
5445812 |
T |
|
| Q |
318 |
tgagtatctcccaatgtggccttaacctggaacattccttcatcaatggtcactaaggaaacatcgaatgttccaccaccaagatcaaacacaagcacat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445811 |
tgagtatctcccaatgtggccttaacctggaacattccttcatcaatggtcactaaggaaacatcgaatgttccaccaccaagatcaaacacaagcacat |
5445712 |
T |
|
| Q |
418 |
tcttctc |
424 |
Q |
| |
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||||||| |
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| T |
5445711 |
tcttctc |
5445705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 164 - 409
Target Start/End: Original strand, 5440705 - 5440959
Alignment:
| Q |
164 |
tgaagaaagtaacctctttgctttctcacatgctgatcttaac----ctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttct |
259 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5440705 |
tgaagaaggtaacctctttgctttctcacatgctgaccttaactaacctccccaaagctttggaattctcactgatcttcaaatccttcttgtactttct |
5440804 |
T |
|
| Q |
260 |
atgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaa--atga--gtatctcccaatgtggccttaacctggaacattcc |
355 |
Q |
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|| |||||||||||||||| ||||||||||||||||||| || |||| | ||||||| || | |||| || |||||| || ||||| | ||| ||||| |
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| T |
5440805 |
ataaaataattcaacaagaaggttcaccaaattgttatcaaactcaacatcacccaaacattaacgtatgtctcaatgttgctttaactttgaatattcc |
5440904 |
T |
|
| Q |
356 |
ttcatcaatggt-cactaaggaaacatcgaatgttccaccaccaagatcaaacac |
409 |
Q |
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||| |||||| | |||||||||||||| || |||||||||||||| || ||||| |
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| T |
5440905 |
ttcgtcaatgatggactaaggaaacatcaaaagttccaccaccaaggtcgaacac |
5440959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 177 - 344
Target Start/End: Original strand, 5433330 - 5433497
Alignment:
| Q |
177 |
ctctttgctttctcacatgctgatcttaacctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaa |
276 |
Q |
| |
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|||||| |||| ||||||||||| ||||| |||| |||||||||| ||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |
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| T |
5433330 |
ctctttactttatcacatgctgaccttaatctccacaaagctttggaattctcactgatgttcaaatctttcttgtactttctatgaaacaattcaacaa |
5433429 |
T |
|
| Q |
277 |
gacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggccttaacc |
344 |
Q |
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|||||||||||||||||||||| || |||| ||||| ||||||||||||| ||||| ||| |||||| |
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| T |
5433430 |
gacggttcaccaaattgttatcaaagtcaacaccacttaaatgagtatctctcaatgaggctttaacc |
5433497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 325
Target Start/End: Original strand, 5432453 - 5432565
Alignment:
| Q |
213 |
aaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccac |
312 |
Q |
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|||||||| ||||||||| || ||||| || ||||||||| |||| | || ||||||||||||| |||||||||||||||||| |||| | | ||| |
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| T |
5432453 |
aaagctttataattctcaccaatgttcaagtctttcttgtacattctctttaacaattcaacaagacagttcaccaaattgttatcaaaattgaaagcac |
5432552 |
T |
|
| Q |
313 |
ccaaatgagtatc |
325 |
Q |
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||||||||||||| |
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| T |
5432553 |
ccaaatgagtatc |
5432565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 5433235 - 5433294
Alignment:
| Q |
45 |
gtctccatgcactttttgaacaaatccttgtttatttcctcaaagaaagctctagtaaca |
104 |
Q |
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||||||||||| | ||| ||||| |||| ||||||| ||||||| ||||||||||||||| |
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| T |
5433235 |
gtctccatgcattgtttaaacaagtcctggtttattccctcaaacaaagctctagtaaca |
5433294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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