View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10381_low_7 (Length: 409)
Name: NF10381_low_7
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10381_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 8330786 - 8330383
Alignment:
| Q |
1 |
ccctgatgctgttcacaaagttagacaaaagatcatagagcatatggatttatggttgtctcagtgtcaggacacaggcaggacttgtatataagatttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8330786 |
ccctgatgctgttcacaaagttagacaaaagatcatagagcatatggatttatggttgtctcagtgtcaggacacgggcaggacttgtatataagatttg |
8330687 |
T |
|
| Q |
101 |
tatgagttgcatgatgttacaactagaagttactctggtttctagtattaatacttaattatatgttgtgctttgaataatcttgtgtaagttgatcaaa |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8330686 |
tatgagttgcatgatgt-acaactagaagttactctggtttctagtattaatacttaattatatgttgtgctttgaataatcttgtgtaagttgatcaaa |
8330588 |
T |
|
| Q |
201 |
tgcaaggcaaaacatatttgtacaaagttattttatatcgttcaatctcaagataatagtgtaccagttatatatttataacatttgggtgtcattggcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8330587 |
tgcaaggcaaaacatatttgtacaaagttattttatatcgttcaatctcaagataatagtgtaccagttatatatttataacatttgggtgtcattggcc |
8330488 |
T |
|
| Q |
301 |
tatagtgaaaatctacaaagaaaatggatgtctacttagtagtgactttggtcatttttcattggccactgatgcatagagtcattagtccctgtctctg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
8330487 |
tatagtgaaaatctacaaagaaaatggatgtctacttagtagtgactttggtcatttttcattggtcactgatgcatagaatcattagtccctgtctctg |
8330388 |
T |
|
| Q |
401 |
cttct |
405 |
Q |
| |
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|||| |
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|
| T |
8330387 |
tttct |
8330383 |
T |
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