View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10381_low_8 (Length: 400)

Name: NF10381_low_8
Description: NF10381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10381_low_8
NF10381_low_8
[»] chr4 (20 HSPs)
chr4 (80-388)||(48013008-48013316)
chr4 (18-242)||(37739526-37739747)
chr4 (13-124)||(22172255-22172367)
chr4 (68-243)||(33927156-33927329)
chr4 (39-79)||(48013943-48013983)
chr4 (161-242)||(56199129-56199211)
chr4 (161-246)||(18860048-18860131)
chr4 (161-233)||(10248096-10248166)
chr4 (161-233)||(10386214-10386284)
chr4 (144-243)||(8871469-8871568)
chr4 (161-243)||(15811899-15811982)
chr4 (163-243)||(647202-647281)
chr4 (163-243)||(650474-650553)
chr4 (161-242)||(3797579-3797661)
chr4 (161-233)||(12786398-12786470)
chr4 (159-243)||(26060776-26060861)
chr4 (161-233)||(52006295-52006367)
chr4 (161-233)||(11702354-11702424)
chr4 (161-233)||(17670582-17670652)
chr4 (76-124)||(19859384-19859432)
[»] chr6 (21 HSPs)
chr6 (13-242)||(11192348-11192576)
chr6 (14-243)||(13021017-13021246)
chr6 (14-131)||(12988002-12988117)
chr6 (182-243)||(12979898-12979959)
chr6 (13-109)||(24371347-24371443)
chr6 (161-233)||(5617985-5618055)
chr6 (161-243)||(14966500-14966580)
chr6 (161-233)||(10290262-10290334)
chr6 (161-242)||(14969980-14970059)
chr6 (163-243)||(14790786-14790865)
chr6 (156-233)||(20186015-20186092)
chr6 (156-233)||(22149899-22149976)
chr6 (200-233)||(23381947-23381980)
chr6 (200-233)||(23384527-23384560)
chr6 (200-233)||(30655771-30655804)
chr6 (203-243)||(2331596-2331636)
chr6 (161-233)||(23008336-23008408)
chr6 (161-233)||(23779956-23780028)
chr6 (161-229)||(23842568-23842635)
chr6 (203-243)||(26942200-26942240)
chr6 (161-233)||(34502622-34502692)
[»] chr1 (20 HSPs)
chr1 (14-242)||(7635777-7636004)
chr1 (18-216)||(16062003-16062203)
chr1 (47-136)||(27355176-27355262)
chr1 (19-242)||(16056567-16056790)
chr1 (99-242)||(16060440-16060581)
chr1 (166-233)||(27331550-27331616)
chr1 (13-111)||(34065054-34065156)
chr1 (68-124)||(29643102-29643158)
chr1 (13-124)||(30938444-30938556)
chr1 (80-176)||(13430155-13430250)
chr1 (13-47)||(42022769-42022803)
chr1 (18-87)||(16060886-16060957)
chr1 (96-242)||(11666760-11666906)
chr1 (163-228)||(49716657-49716721)
chr1 (163-228)||(49720139-49720203)
chr1 (163-243)||(13493430-13493509)
chr1 (18-124)||(28111190-28111299)
chr1 (161-233)||(2405797-2405869)
chr1 (163-242)||(10765087-10765165)
chr1 (18-99)||(16055472-16055556)
[»] chr3 (19 HSPs)
chr3 (14-233)||(22993460-22993677)
chr3 (13-233)||(18542766-18542986)
chr3 (161-243)||(3306133-3306214)
chr3 (161-233)||(2784389-2784459)
chr3 (13-92)||(17546069-17546149)
chr3 (193-243)||(4250699-4250748)
chr3 (161-242)||(16244244-16244325)
chr3 (163-243)||(19869265-19869344)
chr3 (161-243)||(30157796-30157877)
chr3 (166-243)||(41977377-41977454)
chr3 (68-121)||(47051765-47051818)
chr3 (200-233)||(7486969-7487002)
chr3 (161-233)||(52200277-52200349)
chr3 (161-233)||(52309383-52309455)
chr3 (200-240)||(6031207-6031247)
chr3 (203-235)||(8461255-8461287)
chr3 (161-229)||(31549555-31549622)
chr3 (203-243)||(34983540-34983580)
chr3 (161-233)||(42354178-42354248)
[»] chr5 (19 HSPs)
chr5 (16-243)||(21915254-21915481)
chr5 (16-243)||(31575548-31575774)
chr5 (161-233)||(2453563-2453633)
chr5 (161-233)||(34652535-34652605)
chr5 (161-228)||(10629489-10629555)
chr5 (161-243)||(21335458-21335540)
chr5 (161-242)||(21332440-21332521)
chr5 (161-233)||(3195362-3195432)
chr5 (161-233)||(30764506-30764576)
chr5 (68-233)||(7625287-7625452)
chr5 (166-233)||(26548366-26548431)
chr5 (166-233)||(26551925-26551990)
chr5 (161-242)||(7271304-7271385)
chr5 (168-233)||(28787094-28787159)
chr5 (163-242)||(21680644-21680721)
chr5 (161-230)||(30761687-30761754)
chr5 (161-233)||(19686451-19686521)
chr5 (161-233)||(28562140-28562210)
chr5 (161-233)||(28565708-28565778)
[»] chr2 (16 HSPs)
chr2 (13-124)||(34682810-34682920)
chr2 (161-242)||(3252590-3252667)
chr2 (161-242)||(15703739-15703818)
chr2 (68-243)||(45454040-45454215)
chr2 (161-233)||(1503200-1503270)
chr2 (161-233)||(1506404-1506474)
chr2 (161-233)||(13518572-13518642)
chr2 (18-89)||(25820765-25820837)
chr2 (161-243)||(45457420-45457503)
chr2 (161-242)||(43723968-43724049)
chr2 (161-233)||(15470726-15470798)
chr2 (161-242)||(15719043-15719122)
chr2 (161-233)||(25820618-25820690)
chr2 (193-242)||(30926843-30926891)
chr2 (200-233)||(42368477-42368510)
chr2 (161-244)||(31427304-31427388)
[»] scaffold0233 (1 HSPs)
scaffold0233 (13-242)||(10068-10296)
[»] chr7 (21 HSPs)
chr7 (118-233)||(18559989-18560104)
chr7 (153-233)||(18560827-18560907)
chr7 (16-242)||(5796671-5796894)
chr7 (18-89)||(48645593-48645665)
chr7 (161-243)||(26153434-26153514)
chr7 (161-233)||(8398100-8398170)
chr7 (161-233)||(11825134-11825204)
chr7 (161-233)||(22232405-22232475)
chr7 (161-233)||(22254264-22254334)
chr7 (203-242)||(4524151-4524190)
chr7 (204-243)||(13907568-13907607)
chr7 (163-243)||(6967315-6967394)
chr7 (161-242)||(11397820-11397902)
chr7 (163-243)||(17866352-17866431)
chr7 (163-243)||(38431679-38431758)
chr7 (68-121)||(6603630-6603682)
chr7 (193-242)||(13809276-13809324)
chr7 (161-233)||(26557772-26557844)
chr7 (161-233)||(48645740-48645812)
chr7 (161-233)||(5826487-5826557)
chr7 (161-233)||(23776170-23776241)
[»] scaffold0002 (2 HSPs)
scaffold0002 (68-233)||(118222-118386)
scaffold0002 (68-233)||(99008-99176)
[»] chr8 (16 HSPs)
chr8 (161-242)||(5538535-5538616)
chr8 (68-242)||(14589387-14589559)
chr8 (161-243)||(31981630-31981710)
chr8 (161-242)||(18695744-18695823)
chr8 (203-243)||(8911964-8912004)
chr8 (203-243)||(10664264-10664304)
chr8 (161-245)||(31986557-31986639)
chr8 (15-105)||(4868380-4868470)
chr8 (161-242)||(33883114-33883196)
chr8 (161-242)||(5964526-5964605)
chr8 (161-242)||(5980058-5980138)
chr8 (163-242)||(9467351-9467429)
chr8 (71-124)||(16953961-16954014)
chr8 (18-89)||(5538691-5538763)
chr8 (161-233)||(14188441-14188511)
chr8 (161-233)||(30645755-30645825)
[»] scaffold0034 (1 HSPs)
scaffold0034 (13-110)||(48302-48399)
[»] scaffold0014 (2 HSPs)
scaffold0014 (161-243)||(223989-224069)
scaffold0014 (161-245)||(228915-228997)
[»] scaffold0062 (2 HSPs)
scaffold0062 (161-242)||(52651-52730)
scaffold0062 (161-242)||(67600-67679)
[»] scaffold0737 (1 HSPs)
scaffold0737 (161-233)||(7118-7189)
[»] scaffold0045 (1 HSPs)
scaffold0045 (161-244)||(90046-90129)
[»] scaffold0401 (1 HSPs)
scaffold0401 (182-244)||(4565-4625)
[»] scaffold0690 (1 HSPs)
scaffold0690 (68-121)||(7596-7649)
[»] scaffold0068 (1 HSPs)
scaffold0068 (163-242)||(33730-33807)
[»] scaffold0360 (1 HSPs)
scaffold0360 (161-233)||(6555-6625)
[»] scaffold0214 (2 HSPs)
scaffold0214 (161-233)||(13887-13957)
scaffold0214 (161-233)||(27903-27973)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 80 - 388
Target Start/End: Complemental strand, 48013316 - 48013008
Alignment:
Q  80 ttacttttatgcacaacaaacctactgcctcggacactaaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggtcct 179  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48013316 ttacctttatgcacaacaaacctactgcctcgggcactaaaataaactttacgcatcatatttcataacacaattgtttacttgaaattaacacggtcct 48013217  T
Q  180 catggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaactcgtataggctttcatctcattatcaaactttcta 279  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48013216 cgtggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaactcatataggctttcatctcattatcaaactttcta 48013117  T
Q  280 caaactataaaccaatccacctcaccatatacaagtaatgatgcaatcactctaaatcaacatttccattttgatcaacattgactatgtcatgatcata 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48013116 caaactataaaccaatccacctcaccatatacaagtaatgatgcaatcactctaaatcaacatttccattttgatcaacattgactatgtcatgatcata 48013017  T
Q  380 tggatgaat 388  Q
    |||||||||    
T  48013016 tggatgaat 48013008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 37739747 - 37739526
Alignment:
Q  18 gattcgaaagatctagtctcatctctctctatcttttctaaacaactttaattttctgttatttactttt-atgcacaacaaacctactgcctcggacac 116  Q
    ||||||||||| ||||||||   || |||||||||||||||||||||||| ||||||| || |||||||| |||| |||  ||||||||||||| | |||    
T  37739747 gattcgaaagacctagtctc---tccctctatcttttctaaacaacttta-ttttctgctacttactttttatgcgcaaagaacctactgcctcaggcac 37739652  T
Q  117 taaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagttt 216  Q
    ||||||||||||||| |||| ||||||||| | |  |||||||||||| ||||||||||||||| ||||||| ||||| ||| |||||||||||||||||    
T  37739651 taaaataaactttacacatcctatttcatatcgctattgtttacttgagattaacacggtcctcgtggaaacgaacttaattgtattacttcgatagttt 37739552  T
Q  217 ttagtacacttgctaaacatctatca 242  Q
    ||| ||||||||||||| ||||||||    
T  37739551 ttaatacacttgctaaatatctatca 37739526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 22172367 - 22172255
Alignment:
Q  13 cagaggattcgaaagatctagtctcatctctctctatcttttctaaacaactttaattttctgt-tatttacttttatgcacaacaaacctactgcctcg 111  Q
    |||||||||| ||||| |||||||||||||||| ||||||||| ||| ||  || |||||| || ||||||| ||||||||||  |||| ||||||||||    
T  22172367 cagaggattcaaaagacctagtctcatctctctatatcttttccaaaaaatctttattttccgtctatttacatttatgcacacaaaacatactgcctcg 22172268  T
Q  112 gacactaaaataa 124  Q
    | |||||||||||    
T  22172267 ggcactaaaataa 22172255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 243
Target Start/End: Original strand, 33927156 - 33927329
Alignment:
Q  68 attttctgttatttactttt-atgcacaacaaacctactgcctcggacactaaaataaactttacgcatcatatttcataacacagttgtttacttgaaa 166  Q
    ||||| |||||||||||||| ||||||| ||| ||||||||||||| |||||||| ||| ||||| |||| ||  |  ||||    ||| | | |||| |    
T  33927156 attttatgttatttactttttatgcacaccaa-cctactgcctcgggcactaaaagaaa-tttacacatcctagatattaacgttattgctaaattgaga 33927253  T
Q  167 ttaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    ||||||| |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||  ||||||||    
T  33927254 ttaacacagtcctcgtggatacgaacttaattttattacttcgatag-ttttagtacacttgctaaaagtctatcaa 33927329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 48013983 - 48013943
Alignment:
Q  39 tctctctctatcttttctaaacaactttaattttctgttat 79  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48013983 tctctctctatcttttctaaacaactttaattttctgttat 48013943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 56199129 - 56199211
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaacatctatca 242  Q
    |||| |||||||| |||||| |||| || ||||| ||| ||||||||||||   |||||||||||||||||||| ||||||||    
T  56199129 ttgagattaacacagtcctcgtggatacgaacttaattttattacttcgatgcatttttagtacacttgctaaaaatctatca 56199211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 18860048 - 18860131
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaactc 246  Q
    |||| |||||||| |||||| |||| || ||||| ||| ||||||||||||| ||||||||||||||||||||  | |||||||||    
T  18860048 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgata-tttttagtacacttgctaaaagtttatcaactc 18860131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 10248096 - 10248166
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  10248096 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 10248166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 10386214 - 10386284
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  10386214 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 10386284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 8871568 - 8871469
Alignment:
Q  144 ataacacagttgtttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||||||| ||||||  ||||| ||||||| |||||| |||| || | ||||  | || |||||||||||||||| |||||||||| | | |||||||||    
T  8871568 ataacacaattgttttattgaagttaacacagtcctcgtggagacgatcttttctttactacttcgatagtttttggtacacttgccagatatctatcaa 8871469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 15811982 - 15811899
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgat-agtttttagtacacttgctaaacatctatcaa 243  Q
    |||| |||||||| |||||| |||| || ||||| ||| ||||||||||||   ||||||||||||||||||||  ||||||||    
T  15811982 ttgagattaacacagtcctcgtggatacgaacttaattttattacttcgatgcatttttagtacacttgctaaaggtctatcaa 15811899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 647281 - 647202
Alignment:
Q  163 gaaattaaca-cggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||||||||| |||||||| |||| |||||||||||||   ||||||||||| |||| |||||||||| ||| || ||||||    
T  647281 gaaattaacaacggtcctcgtggatacaaactttattac--tacttcgatagcttttggtacacttgccaaatatttatcaa 647202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 650553 - 650474
Alignment:
Q  163 gaaattaaca-cggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||||||||| |||||||| |||| |||||||||||||   ||||||||||| |||| |||||||||| ||| || ||||||    
T  650553 gaaattaacaacggtcctcgtggatacaaactttattac--tacttcgatagcttttggtacacttgccaaatatttatcaa 650474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 3797661 - 3797579
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgat-agtttttagtacacttgctaaacatctatca 242  Q
    |||| |||||||| |||||| |||| || ||||| ||| ||||||||||||   ||||||||||||||||||||  |||||||    
T  3797661 ttgagattaacacagtcctcgtggatacgaacttaattttattacttcgatgcatttttagtacacttgctaaaagtctatca 3797579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 12786398 - 12786470
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||  ||||||||||||||||||||    
T  12786398 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatacatttttagtacacttgctaaa 12786470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 26060776 - 26060861
Alignment:
Q  159 acttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaacatctatcaa 243  Q
    |||||| |||||||  |||||| |||| || |||||  || |||||||||||||  ||||||||||||||||||||  ||||||||    
T  26060776 acttgagattaacatagtcctcgtggatacgaacttatttttattacttcgatacatttttagtacacttgctaaaagtctatcaa 26060861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 52006367 - 52006295
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| |||||||| ||| ||||||||||||   ||||||||||||||||||||    
T  52006367 ttgagattaacacagtcctcgtggatacaaactt-attttattacttcgattcatttttagtacacttgctaaa 52006295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 11702424 - 11702354
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| ||| || |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  11702424 ttgagattaacacagtcttcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 11702354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 17670582 - 17670652
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||  |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  17670582 ttgagattaacatagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 17670652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 19859432 - 19859384
Alignment:
Q  76 ttatttacttttatgcacaacaaacctactgcctcggacactaaaataa 124  Q
    ||||||| ||||||||| | |||| |||||||||| |||||||||||||    
T  19859432 ttatttaattttatgcaaaccaaaactactgcctcagacactaaaataa 19859384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 11192576 - 11192348
Alignment:
Q  13 cagaggattcgaaagatctagtctcatctctctctatcttttctaaacaactttaattttctgttatttactttt-atgcacaacaaacctactgcctcg 111  Q
    |||||||||||||||| ||| ||  |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| || ||||| |||||||    
T  11192576 cagaggattcgaaagacctaatcatatctctctctatcttttctaaacaacttta-ttttatgttatttactttttatgcaca-catacctattgcctcg 11192479  T
Q  112 gacactaaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgat 211  Q
    | |||||||||||||||||| |||| ||||||||||  || |||||||||||| ||||||||||| ||| ||||||| ||||| ||| ||||||||||||    
T  11192478 ggcactaaaataaactttactcatcttatttcataatgcaattgtttacttgagattaacacggtactcgtggaaacgaacttaattgtattacttcgat 11192379  T
Q  212 agtttttagtacacttgctaaacatctatca 242  Q
    |||||||||||||||||||||| ||||||||    
T  11192378 agtttttagtacacttgctaaatatctatca 11192348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 13021246 - 13021017
Alignment:
Q  14 agaggattcgaaagatctagtctcatctctctctatcttttctaaacaactttaattttctgttatttactt-ttatgcacaacaaacctactgcctcgg 112  Q
    ||||||||| ||||| ||| |||||||||||||||| |||| |||||||||||| ||||||| ||||||||| ||||||| |||||||||||| ||||||    
T  13021246 agaggattcaaaagacctactctcatctctctctatattttataaacaacttta-ttttctgctatttacttgttatgcaaaacaaacctactacctcgg 13021148  T
Q  113 acactaaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgata 212  Q
     ||||||||||||| |||  |||| ||||||||||| |  |||||||||||| ||||||||||||||| |||||||||| || |||  |||||||||||     
T  13021147 gcactaaaataaacattaaacatcctatttcataacgctattgtttacttgagattaacacggtcctcgtggaaacaaatttaattgcattacttcgatg 13021048  T
Q  213 gtttttagtacacttgctaaacatctatcaa 243  Q
    |||||||||||||||||||||  ||||||||    
T  13021047 gtttttagtacacttgctaaatttctatcaa 13021017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 12988117 - 12988002
Alignment:
Q  14 agaggattcgaaagatctagtctcatctctctctatcttttctaaacaactttaattttctgttatttactttt-atgcacaacaaacctactgcctcgg 112  Q
    ||||||||| ||||| |||||| ||||||||| |||  ||| |||||||||||| ||||||  ||||||||||| ||||| |||||||||||||||||||    
T  12988117 agaggattcaaaagacctagtcacatctctctatat--tttataaacaacttta-ttttctactatttactttttatgcaaaacaaacctactgcctcgg 12988021  T
Q  113 acactaaaataaactttac 131  Q
     ||||||||||||| ||||    
T  12988020 ccactaaaataaacattac 12988002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 12979959 - 12979898
Alignment:
Q  182 tggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    ||||||||||||| ||| |||||||||||| |||||||||||||||||||||  ||||||||    
T  12979959 tggaaacaaacttaattgtattacttcgatggtttttagtacacttgctaaatttctatcaa 12979898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 24371347 - 24371443
Alignment:
Q  13 cagaggattcgaaagatctagtctcatctctctctatcttttctaaacaact-ttaattttctgttatttacttttatgcacaacaaacctactgcct 109  Q
    |||||||||||||| | |||||||||||||||  ||| ||||| |||||| | || ||||||||||||||||||||||||| | |||| |||||||||    
T  24371347 cagaggattcgaaatacctagtctcatctctccatatattttccaaacaaatctttattttctgttatttacttttatgca-atcaaatctactgcct 24371443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 5618055 - 5617985
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| |||||||| ||| |||||||||||||| |||||||||||||||||||    
T  5618055 ttgagattaacacagtcctcgtggatacaaactt-attttattacttcgatag-ttttagtacacttgctaaa 5617985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 14966500 - 14966580
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||||||| |||||||||||||||  ||||||||    
T  14966500 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatagtttt-agtacacttgctaaaagtctatcaa 14966580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 10290262 - 10290334
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| |||||||| ||| |||||||||||||  ||||||||||||||||||||    
T  10290262 ttgagattaacacagtcctcgtggatacaaactt-attttattacttcgatacatttttagtacacttgctaaa 10290334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 14969980 - 14970059
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    |||| |||||||  ||||||||||| || ||||| ||| |||||||||||||| |||||||||||||||||||  |||||||    
T  14969980 ttgagattaacatagtcctcatggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaaagtctatca 14970059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 14790786 - 14790865
Alignment:
Q  163 gaaattaaca-cggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||||||||| |||||||| |||| || ||||||||||   ||||||||||| |||| |||||||||| ||| |||||||||    
T  14790786 gaaattaacaacggtcctcgtggatacgaactttattac--tacttcgatagcttttggtacacttgccaaatatctatcaa 14790865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 20186015 - 20186092
Alignment:
Q  156 tttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaa 233  Q
    ||||||||| |||||||| |||||| |||| || ||||| ||| |||||||||||||  |||||||| |||||||||||    
T  20186015 tttacttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatacatttttagtgcacttgctaaa 20186092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 22149976 - 22149899
Alignment:
Q  156 tttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaa 233  Q
    ||||||||| |||||||| |||||| |||| || ||||| ||| |||||||||||||  |||||||| |||||||||||    
T  22149976 tttacttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatacatttttagtgcacttgctaaa 22149899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 23381980 - 23381947
Alignment:
Q  200 tattacttcgatagtttttagtacacttgctaaa 233  Q
    ||||||||||||||| ||||||||||||||||||    
T  23381980 tattacttcgatagtatttagtacacttgctaaa 23381947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 23384560 - 23384527
Alignment:
Q  200 tattacttcgatagtttttagtacacttgctaaa 233  Q
    ||||||||||||||| ||||||||||||||||||    
T  23384560 tattacttcgatagtatttagtacacttgctaaa 23384527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 30655771 - 30655804
Alignment:
Q  200 tattacttcgatagtttttagtacacttgctaaa 233  Q
    ||||||||||||||| ||||||||||||||||||    
T  30655771 tattacttcgatagtatttagtacacttgctaaa 30655804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 2331596 - 2331636
Alignment:
Q  203 tacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||||||||||||||| |||||||||| ||| |||||||||    
T  2331596 tacttcgatagtttttggtacacttgccaaatatctatcaa 2331636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 23008336 - 23008408
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| ||||||||||| || | |||   | || |||||||||||| ||||||||||||||||||    
T  23008336 ttgagattaacacagtcctcatggatacgatcttagatttactacttcgatagtatttagtacacttgctaaa 23008408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 23780028 - 23779956
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| ||||||||||| || | |||   | || |||||||||||| ||||||||||||||||||    
T  23780028 ttgagattaacacagtcctcatggatacgatcttagatttactacttcgatagtatttagtacacttgctaaa 23779956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 23842635 - 23842568
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgc 229  Q
    |||| |||||||| |||||| |||| || ||||| ||| ||||| ||||||||||||| ||||||||||    
T  23842635 ttgagattaacacagtcctcgtggatacgaactt-attttattatttcgatagtttttggtacacttgc 23842568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 26942240 - 26942200
Alignment:
Q  203 tacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||||||||||| ||||||||||||||||||  ||||||||    
T  26942240 tacttcgatagtatttagtacacttgctaaaattctatcaa 26942200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 34502622 - 34502692
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| || ||||||||||||||| |||||||||||||||    
T  34502622 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgatagtttt-agtacacttgctaaa 34502692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 7635777 - 7636004
Alignment:
Q  14 agaggattcgaaagatctagtctcatctctctctatcttttctaaacaactttaattttctgttatttactttt-atgcacaacaaacctactgcctcgg 112  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||  ||||||    
T  7635777 agagaattcgaaagacctagtctaatctctctctatcttttctaaacaacttta-ttttctgatatttactttttatgcacaacaaacctaccacctcgg 7635875  T
Q  113 acactaaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgata 212  Q
      ||||||||||| ||||| |||| |||||||||||||  ||||||| |||| ||||||||||||||  | |||||||||||||||||||||||| ||||    
T  7635876 gtactaaaataaa-tttacacatcctatttcataacactattgtttaattgagattaacacggtccttgtagaaacaaactttattatattactttgata 7635974  T
Q  213 gtttttagtacacttgctaaacatctatca 242  Q
    |||||||||||||||||||||  |||||||    
T  7635975 gtttttagtacacttgctaaatttctatca 7636004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 16062203 - 16062003
Alignment:
Q  18 gattcgaaagatctagtctcatctctctctat--cttttctaaacaactttaattttctgttatttactttt-atgcacaacaaacctactgcctcggac 114  Q
    ||||||||||| |||||||||||||| || ||  |||||  ||||||  || ||||||| ||||||| |||| ||||||||||||||||||| |||||||    
T  16062203 gattcgaaagacctagtctcatctctttccataactttttcaaacaatctttattttctattatttaatttttatgcacaacaaacctactgtctcggac 16062104  T
Q  115 actaaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagt 214  Q
    |||||||||| |||||| |||| ||||||||||  |  |||||||||||| ||||||||||| ||||||||||| ||||| ||| ||||||||| |||||    
T  16062103 actaaaataa-ctttacacatcttatttcataatgctattgtttacttgagattaacacggttctcatggaaacgaacttaattgtattacttcaatagt 16062005  T
Q  215 tt 216  Q
    ||    
T  16062004 tt 16062003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 27355262 - 27355176
Alignment:
Q  47 tatcttttctaaacaactttaattttctgttatttacttttatgcacaacaaacctactgcctcggacactaaaataaactttacgcatc 136  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  27355262 tatcttttctaaacaactttaattt-ctataatttacttttatgcacaacaaacctactgcctcgggcactaaaataa--tttacgcatc 27355176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 16056790 - 16056567
Alignment:
Q  19 attcgaaagatctagtctcatctctctc--tatcttttctaaacaactttaattttctgttattt-acttttatgcacaacaaacctactgcctcggaca 115  Q
    |||||||||| |||||||||||||||||  || |||||| ||||||  || |||||||||||||| | |||||||||||||||| |||||| ||| | ||    
T  16056790 attcgaaagacctagtctcatctctctccataacttttccaaacaatctttattttctgttatttaatttttatgcacaacaaatctactgtctcaggca 16056691  T
Q  116 ctaaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtt 215  Q
    |||||   |||||||| |||| ||||||||||  |  | |||||||||| ||||| |  || |||||||||||||  || ||| ||||| ||| |||| |    
T  16056690 ctaaa--taactttacacatcctatttcataatgctatcgtttacttgagattaatattgttctcatggaaacaacattaattgtattagttcaatag-t 16056594  T
Q  216 tttagtacacttgctaaacatctatca 242  Q
    |||||||||| | |||||  |||||||    
T  16056593 tttagtacaccttctaaaagtctatca 16056567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 16060581 - 16060440
Alignment:
Q  99 acctactgcctcggacactaaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggtcctcatggaaacaaactttatt 198  Q
    |||| ||||||||| |||||| |||| |||||| |||| | ||||||||  |  |||||||||||| ||||||||||| ||||||||||  ||||| |||    
T  16060581 acctgctgcctcgggcactaatataa-ctttacacatcctgtttcataatgctattgtttacttgagattaacacggttctcatggaaaagaacttaatt 16060483  T
Q  199 atattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
     ||||||||| |||| ||| ||||||| |||||||  |||||||    
T  16060482 gtattacttcaatag-tttcagtacacctgctaaaagtctatca 16060440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 27331616 - 27331550
Alignment:
Q  166 attaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||||| |||||| ||||||||||||    
T  27331616 attaacacggtcctcgtggaaatgaactttattatattacttcgatag-ttttaggacacttgctaaa 27331550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 34065156 - 34065054
Alignment:
Q  13 cagaggattcgaaagatctagtctcatctctctc--tatcttttctaaacaactttaattttctgt-tatttact-tttatgcacaacaaacctactgcc 108  Q
    |||||||||||||||| |||||||||||||||||  ||||||||| ||||||  || ||||| ||| |||||||| ||||||||  ||||||||||||||    
T  34065156 cagaggattcgaaagacctagtctcatctctctccatatcttttccaaacaatctttattttttgtctatttactgtttatgcagcacaaacctactgcc 34065057  T
Q  109 tcg 111  Q
    |||    
T  34065056 tcg 34065054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 29643158 - 29643102
Alignment:
Q  68 attttctgttatttactttt-atgcacaacaaacctactgcctcggacactaaaataa 124  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||    
T  29643158 attttctgttatttactttttaagcaca-caaacctactgcctcggacactaaaataa 29643102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 30938556 - 30938444
Alignment:
Q  13 cagaggattcgaaagatctagtctcatctctctctatcttttctaaacaa-ctttaattttctgttattt-acttttatgcacaacaaacctactgcctc 110  Q
    ||||||||||||| |||||  |||||||||||  ||| |||||||||||| |||||  || |  |||||| |||||||||||| ||||||||||||||||    
T  30938556 cagaggattcgaatgatctgatctcatctctccatatattttctaaacaagctttatattccgtttatttaacttttatgcac-acaaacctactgcctc 30938458  T
Q  111 ggacactaaaataa 124  Q
    || || ||||||||    
T  30938457 gggcagtaaaataa 30938444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 13430250 - 13430155
Alignment:
Q  80 ttacttttatgcacaacaaacctactgcctcggacactaaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggt 176  Q
    |||||||||||||||||||||||||| ||| || ||||||||| ||||| || |||| ||||||||||     |||||||||||| ||||| |||||    
T  13430250 ttacttttatgcacaacaaacctactacctggggcactaaaat-aacttgacacatcctatttcataaagttattgtttacttgagattaatacggt 13430155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 42022769 - 42022803
Alignment:
Q  13 cagaggattcgaaagatctagtctcatctctctct 47  Q
    |||||||||||||||||||||||||||||||||||    
T  42022769 cagaggattcgaaagatctagtctcatctctctct 42022803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 16060957 - 16060886
Alignment:
Q  18 gattcgaaagatctagtctcatctctctctat--cttttctaaacaactttaattttctgttatttactttt 87  Q
    ||||||||||| ||||||||||||||||| ||  |||||| ||||||  || ||||||||||||||| ||||    
T  16060957 gattcgaaagacctagtctcatctctctccattacttttccaaacaatctttattttctgttatttaatttt 16060886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 242
Target Start/End: Complemental strand, 11666906 - 11666760
Alignment:
Q  96 caaacctactgcctcggacactaaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggtcctcatggaaacaaacttt 195  Q
    |||| ||||||||| || ||  ||||||| |||||| |||| |||||  |||| |   |||||  |||| |||| |||||||||  ||||||| ||||||    
T  11666906 caaatctactgcctagggcaacaaaataacctttacacatcctatttattaacgctactgttttattgatattatcacggtccttgtggaaacgaacttt 11666807  T
Q  196 a-ttatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    | || |||||||||||||| |||| ||| |||||||||| ||||||||    
T  11666806 aattttattacttcgatag-ttttggtagacttgctaaaaatctatca 11666760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 49716657 - 49716721
Alignment:
Q  163 gaaattaaca-cggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttg 228  Q
    |||||||||| |||||||| |||| || |||||||||||  |||||||||||||||| |||||||||    
T  49716657 gaaattaacaacggtcctcgtggatacgaactttattat--tacttcgatagtttttggtacacttg 49716721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 49720139 - 49720203
Alignment:
Q  163 gaaattaaca-cggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttg 228  Q
    |||||||||| |||||||| |||| || |||||||||||  |||||||||||||||| |||||||||    
T  49720139 gaaattaacaacggtcctcgtggatacgaactttattat--tacttcgatagtttttggtacacttg 49720203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 13493430 - 13493509
Alignment:
Q  163 gaaattaaca-cggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||||||||| |||||||| |||| || ||||||||||   ||||||||||| |||| |||||||||| ||| |||||||||    
T  13493430 gaaattaacaacggtcctcgtggatacgaactttattac--tacttcgatagcttttggtacacttgccaaatatctatcaa 13493509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 28111190 - 28111299
Alignment:
Q  18 gattcgaaagatctagtctcatctctctcta--tcttttctaaacaactttaattttctgtt-atttacttttatgcacaacaaacctactgcctcggac 114  Q
    ||||||||||||||  ||||||||||||||   ||||| | |||| |  || || ||||||| ||||| ||||||||| | |||| |||||||||| |||    
T  28111190 gattcgaaagatctgatctcatctctctcttattctttccaaaactatctttatattctgtttatttaattttatgcaaaccaaaactactgcctcagac 28111289  T
Q  115 actaaaataa 124  Q
    ||||||||||    
T  28111290 actaaaataa 28111299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 2405797 - 2405869
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||  ||||||||||||||||||||    
T  2405797 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatacatttttagtacacttgctaaa 2405869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 10765087 - 10765165
Alignment:
Q  163 gaaattaaca-cggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    |||||||||| |||||||| |||| || ||||||||||   ||||||||||| |||| |||||||||| ||| ||||||||    
T  10765087 gaaattaacaacggtcctcgtggatacgaactttattac--tacttcgatagcttttggtacacttgccaaatatctatca 10765165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 16055556 - 16055472
Alignment:
Q  18 gattcgaaagatctagtctcatctctctc--tatcttttctaaacaactttaattttctgttattt-acttttatgcacaacaaa 99  Q
    |||||| |||| |||||||||||||||||  || |||||| ||||||  || |||| ||||||||| | ||||||||||||||||    
T  16055556 gattcggaagacctagtctcatctctctccataacttttccaaacaatatttatttactgttatttaatttttatgcacaacaaa 16055472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 22993677 - 22993460
Alignment:
Q  14 agaggattcgaaagatctagtctcatctctctctatcttttctaaacaactttaattttctgttatttacttttatgcacaacaaacctactgcctcgga 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||  |||||| |     
T  22993677 agaggattcgaaagacctagtctcatctctctctatcttttctaaacaactttaattttctattatttactattatgcataacaaacctcttgcctcagg 22993578  T
Q  114 cactaaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag 213  Q
    |||||||||||  ||||| |||| ||||||||| |    ||||||| |||| ||||||||| ||||| ||||||| ||||||||| ||||||||||||||    
T  22993577 cactaaaataa--tttacacatcctatttcatatcgttattgtttaattgagattaacacgatcctcgtggaaacgaactttattttattacttcgatag 22993480  T
Q  214 tttttagtacacttgctaaa 233  Q
    ||||||||||||||||||||    
T  22993479 tttttagtacacttgctaaa 22993460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 18542766 - 18542986
Alignment:
Q  13 cagaggattcgaaagatctagtctcatctctctctatcttttctaaacaa-ctttaattttctgttatttactttt-atgcacaacaaacctactgcctc 110  Q
    ||||||||||||||||  |  |||||||||||| ||| ||||||||| || |||||| || ||||||||||||||| ||||||| |||||||||||||||    
T  18542766 cagaggattcgaaagacatgatctcatctctctttatattttctaaagaaactttaactt-ctgttatttactttttatgcaca-caaacctactgcctc 18542863  T
Q  111 ggacactaaaataaactttacgcatcatatttcataacacagttgtttac-ttgaaattaacacggtcctcatggaaacaaactttattatattacttcg 209  Q
    |  || |||||||||| |||| |||| ||| | |||||    |||||||  |||| ||||||||||||||||||||||| ||||| ||| ||||| ||||    
T  18542864 gagcattaaaataaacattacacatcctatataataacgttattgtttaaattgagattaacacggtcctcatggaaacgaacttgattttattaattcg 18542963  T
Q  210 atagtttttagtacacttgctaaa 233  Q
    |||| |||||||||||||| ||||    
T  18542964 atag-ttttagtacacttgttaaa 18542986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 3306133 - 3306214
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||||| || |||||||||| ||| |||||||||    
T  3306133 ttgagattaacacagtcctcgtggatacgaacttaatt-tattacttcgatagttattggtacacttgccaaatatctatcaa 3306214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 2784389 - 2784459
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  2784389 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 2784459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 17546069 - 17546149
Alignment:
Q  13 cagaggattcgaaagatctagtctcatctctctctatcttttctaaacaact-ttaattttctgttatttacttttatgca 92  Q
    |||| ||||||||||||||  ||||||||||||| || |||||||| ||| | || ||||||| ||||||| |||||||||    
T  17546069 cagaagattcgaaagatctgatctcatctctctccatattttctaatcaaatatttattttctattatttagttttatgca 17546149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 4250699 - 4250748
Alignment:
Q  193 tttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||||| |||||||||||||| |||||||||||||||||||  ||||||||    
T  4250699 tttattttattacttcgatag-ttttagtacacttgctaaaagtctatcaa 4250748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 16244244 - 16244325
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaacatctatca 242  Q
    |||| ||||||||||||||| || | |||||||| ||| ||||||||||||   ||||||||||||||||||||  |||||||    
T  16244244 ttgagattaacacggtcctcgtgtatacaaactt-attttattacttcgatgtatttttagtacacttgctaaaagtctatca 16244325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 19869265 - 19869344
Alignment:
Q  163 gaaattaaca-cggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||||||||| |||||||| |||| || ||||||||||   ||||| ||||| ||||||||||||||| ||| |||||||||    
T  19869265 gaaattaacaacggtcctcgtggatacgaactttattac--tactttgatagattttagtacacttgccaaatatctatcaa 19869344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 30157877 - 30157796
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||||| || |||||||||| |||  ||||||||    
T  30157877 ttgagattaacacagtcctcgtggatacgaacttaatt-tattacttcgatagttattggtacacttgccaaatttctatcaa 30157796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 41977377 - 41977454
Alignment:
Q  166 attaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaacatctatcaa 243  Q
    |||||||| |||||| | || |||||||| ||| |||||||||||||  |||||| ||||||||||||| |||||||||    
T  41977377 attaacacagtcctcgtagatacaaactt-attttattacttcgatacatttttaatacacttgctaaaaatctatcaa 41977454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 47051765 - 47051818
Alignment:
Q  68 attttctgttatttac-ttttatgcacaacaaacctactgcctcggacactaaaa 121  Q
    |||||||||||||||| |||||||||| || ||||||||||||||| ||||||||    
T  47051765 attttctgttatttactttttatgcac-accaacctactgcctcgggcactaaaa 47051818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 7486969 - 7487002
Alignment:
Q  200 tattacttcgatagtttttagtacacttgctaaa 233  Q
    ||||||||||||||| ||||||||||||||||||    
T  7486969 tattacttcgatagtatttagtacacttgctaaa 7487002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 52200277 - 52200349
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgata-gtttttagtacacttgctaaa 233  Q
    ||||||||||||| |||||| |||| || ||| ||||| |||||||||||||  |||||| |||||||||||||    
T  52200277 ttgaaattaacacagtcctcgtggatacgaac-ttattttattacttcgatacatttttaatacacttgctaaa 52200349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 52309455 - 52309383
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaa 233  Q
    ||||||||||||  |||||| |||| || ||||| ||| |||||||||||||  ||||||||||||||||||||    
T  52309455 ttgaaattaacattgtcctcgtggatacgaactt-attttattacttcgatacatttttagtacacttgctaaa 52309383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 6031207 - 6031247
Alignment:
Q  200 tattacttcgatagtttttagtacacttgctaaacatctat 240  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  6031207 tattacttcgataatttttagtacacttgttaaatatctat 6031247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 8461287 - 8461255
Alignment:
Q  203 tacttcgatagtttttagtacacttgctaaaca 235  Q
    |||||||||||| ||||||||||||||||||||    
T  8461287 tacttcgatagtatttagtacacttgctaaaca 8461255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 31549555 - 31549622
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgc 229  Q
    |||| |||||||| ||| || |||| || ||||| ||| ||||||||||||||||||| ||||||||||    
T  31549555 ttgagattaacacagtcatcgtggatacgaactt-attttattacttcgatagtttttggtacacttgc 31549622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 34983580 - 34983540
Alignment:
Q  203 tacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||||||||||| ||| |||||||||| |||||||||||||    
T  34983580 tacttcgatagtatttggtacacttgccaaacatctatcaa 34983540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 42354248 - 42354178
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| ||| |||| |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  42354248 ttgagattgacacagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 42354178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 21915254 - 21915481
Alignment:
Q  16 aggattcgaaagatctagtctcatctctctctatcttttctaaacaactttaattttctgttatttactttt-atgcacaacaaacctactgcctcggac 114  Q
    ||||||||||||| |||||| ||||||||||||||||||| || |||  ||| |||||| |||||||||||| ||||||||||||||||||||||||| |    
T  21915254 aggattcgaaagacctagtcacatctctctctatcttttccaatcaatctta-ttttctattatttactttttatgcacaacaaacctactgcctcgggc 21915352  T
Q  115 actaaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagt 214  Q
    ||| ||||||||||||| |||| |||||||||||    ||| |||||||| |||||||||||||||||| |||| ||||| ||| | ||||||| |||||    
T  21915353 actgaaataaactttacacatcctatttcataacgttattgcttacttgagattaacacggtcctcatgaaaacgaacttaattgttttacttcaatagt 21915452  T
Q  215 ttttagtacacttgctaaacatctatcaa 243  Q
    ||||||||||||||||||| |||||||||    
T  21915453 ttttagtacacttgctaaatatctatcaa 21915481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 31575548 - 31575774
Alignment:
Q  16 aggattcgaaagatctagtctcatctctctctatcttttctaaac-aactttaattttctgttatttacttttat-gcacaacaaacctactgcctcgga 113  Q
    ||||||||||||| |||||||||||||||  ||||||||| |||| ||||||| ||||   |||||| ||||| | |||| |||||| |||||||||||     
T  31575548 aggattcgaaagacctagtctcatctctccatatcttttccaaacaaactttattttttgtttattttcttttctggcac-acaaacttactgcctcggg 31575646  T
Q  114 cactaaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag 213  Q
    |||||||| ||| |||||  ||| ||  | |||||    ||||| | |||| ||||| ||||||||  ||||||| |||||  || |||||||||||||     
T  31575647 cactaaaa-aaaatttacatatcctagataataacgttattgttcaattgagattaatacggtccttgtggaaacgaacttatttttattacttcgata- 31575744  T
Q  214 tttttagtacacttgctaaacatctatcaa 243  Q
       |||||||||||| |||| |||||||||    
T  31575745 aaattagtacacttgttaaatatctatcaa 31575774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 2453563 - 2453633
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| |||||||| ||| |||||||||||||| |||||||||||||||||||    
T  2453563 ttgagattaacacagtcctcgtggatacaaactt-attttattacttcgatag-ttttagtacacttgctaaa 2453633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 34652605 - 34652535
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| |||||||| ||| |||||||||||||| |||||||||||||||||||    
T  34652605 ttgagattaacacagtcctcgtggatacaaactt-attttattacttcgatag-ttttagtacacttgctaaa 34652535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 10629489 - 10629555
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttg 228  Q
    |||| |||||||| ||||||||||| |||||||| ||| ||||||||||||||| ||| |||||||||    
T  10629489 ttgagattaacacagtcctcatggatacaaactt-attttattacttcgatagtatttggtacacttg 10629555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 21335540 - 21335458
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgata-gtttttagtacacttgctaaacatctatcaa 243  Q
    ||||||||||||| |||||| |||| |||||| ||||| |||||||||||||  ||||||||||||||| ||||  ||||||||    
T  21335540 ttgaaattaacacagtcctcgtggatacaaac-ttattttattacttcgatacatttttagtacacttgttaaaagtctatcaa 21335458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 21332521 - 21332440
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaacatctatca 242  Q
    ||||||||||||| |||||| |||| || ||||| ||| |||||||||||||  ||||||||||||||||||||  |||||||    
T  21332521 ttgaaattaacacagtcctcgtggatacgaactt-attttattacttcgatacatttttagtacacttgctaaaagtctatca 21332440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 3195362 - 3195432
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  3195362 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 3195432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 30764506 - 30764576
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  30764506 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 30764576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 233
Target Start/End: Original strand, 7625287 - 7625452
Alignment:
Q  68 attttctgttatttactttt-atgcacaacaaacctactgcctcggacactaaaataaactttacgcatcatatttcataacacagttgtttacttgaaa 166  Q
    |||||||||||||||||||| ||||| | |||| |||||||||||| |||||||| ||| ||||| |||| ||  |  ||||    ||| | | |||| |    
T  7625287 attttctgttatttactttttatgca-atcaaaactactgcctcgggcactaaaagaaa-tttacacatcctagatattaacgttattgctaaattgaga 7625384  T
Q  167 ttaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaa 233  Q
    ||||||| |||||| |||| || ||||||||| || |||||||||   ||||||||||||||||||||    
T  7625385 ttaacacagtcctcgtggatacgaactttattttactacttcgatgcatttttagtacacttgctaaa 7625452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 26548366 - 26548431
Alignment:
Q  166 attaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||||||| |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  26548366 attaacacagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 26548431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 26551925 - 26551990
Alignment:
Q  166 attaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||||||| |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  26551925 attaacacagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 26551990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 7271304 - 7271385
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaacatctatca 242  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||  ||||||||||||||||||||  |||||||    
T  7271304 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatacatttttagtacacttgctaaaagtctatca 7271385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 28787159 - 28787094
Alignment:
Q  168 taacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaa 233  Q
    ||||||||||||| |||| || ||||| ||| |||||||||||||  ||||||||||||||||||||    
T  28787159 taacacggtcctcgtggatacgaactt-attttattacttcgatacatttttagtacacttgctaaa 28787094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 21680644 - 21680721
Alignment:
Q  163 gaaattaaca-cggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    |||||||||| |||||||| |||| |||||||||||  || ||||||||||| |||| |||||||||| ||| ||||||||    
T  21680644 gaaattaacaacggtcctcgtggatacaaactttat--tactacttcgatag-ttttggtacacttgccaaatatctatca 21680721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 30761687 - 30761754
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgct 230  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||| ||||||||||||||||    
T  30761687 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgct 30761754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 19686451 - 19686521
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| || ||||||||||||||| |||||||||||||||    
T  19686451 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgatagtttt-agtacacttgctaaa 19686521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 28562210 - 28562140
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||| | ||| |||||||||||||||||| |||||||||||||||    
T  28562210 ttgagattaacacagtcctcgtggatacgaacct-attttattacttcgatagtttt-agtacacttgctaaa 28562140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 28565778 - 28565708
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||| | ||| |||||||||||||||||| |||||||||||||||    
T  28565778 ttgagattaacacagtcctcgtggatacgaacct-attttattacttcgatagtttt-agtacacttgctaaa 28565708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 34682810 - 34682920
Alignment:
Q  13 cagaggattcgaaagatctagtctcatctctctctatcttttctaaacaactttaattttctgttatttacttttatgcacaacaaacctactgcctcgg 112  Q
    ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |    
T  34682810 cagaggattcgaaagacatagtctcatttctctctatcttttctaaacaactttaa-tttatgttatttacttttatgcacaacaaacctactgcctcag 34682908  T
Q  113 acactaaaataa 124  Q
    ||||||||||||    
T  34682909 acactaaaataa 34682920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 3252590 - 3252667
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    |||| |||||||| || ||| |||||||||| |||    ||||||||||||||||||||||||||||||||||| |||||||    
T  3252590 ttgagattaacacagttctcgtggaaacaaatttt----tattacttcgatagtttttagtacacttgctaaacttctatca 3252667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 15703818 - 15703739
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    ||||||||||||  |||||| |||| || ||||| ||| |||||||||||||||||| ||| ||||||||||| ||||||||    
T  15703818 ttgaaattaacatagtcctcgtggatacgaactt-attttattacttcgatagtttt-agtgcacttgctaaaaatctatca 15703739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 243
Target Start/End: Original strand, 45454040 - 45454215
Alignment:
Q  68 attttctgttatttactttt-atgcacaacaaacctactgcctcggacactaaaataaactttacgcatcatatttcataacacagttgtttacttgaaa 166  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||| | |||||||| ||| ||||| |||| ||  |  ||||    ||| | | |||| |    
T  45454040 attttctgttatttactttttatgcacaccaa-cctactgcctcaggcactaaaacaaa-tttacacatcctagatattaacgttattgctaaattgaga 45454137  T
Q  167 ttaacacggtcctcatggaaacaaactttattatattacttcgat-agtttttagtacacttgctaaacatctatcaa 243  Q
    ||||||| |||||| |||| |||||||| ||| ||||||||||||   | ||||||||||||||||||  ||||||||    
T  45454138 ttaacacagtcctcgtggatacaaacttaattttattacttcgatgcatatttagtacacttgctaaaagtctatcaa 45454215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 1503270 - 1503200
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || || |||||| |||||||||||||| |||||||||||||||||||    
T  1503270 ttgagattaacacagtcctcgtggatacgaa-tttattttattacttcgatag-ttttagtacacttgctaaa 1503200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 1506474 - 1506404
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || || |||||| |||||||||||||| |||||||||||||||||||    
T  1506474 ttgagattaacacagtcctcgtggatacgaa-tttattttattacttcgatag-ttttagtacacttgctaaa 1506404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 13518572 - 13518642
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  13518572 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 13518642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 25820837 - 25820765
Alignment:
Q  18 gattcgaaagatctagtctcatctctctctatcttttctaaaca-actttaattttctgttatttacttttat 89  Q
    ||||||||||| |||||||||||||||  ||| ||||| ||||| |  || ||||||||||||||||||||||    
T  25820837 gattcgaaagacctagtctcatctctccatatattttccaaacatatctttattttctgttatttacttttat 25820765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 45457420 - 45457503
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtt-tttagtacacttgctaaacatctatcaa 243  Q
    |||| |||||||| |||||| |||| || ||||| ||| ||||||||||||   | |||||||||||||||||| |||||||||    
T  45457420 ttgagattaacacagtcctcgtggatacgaacttaattttattacttcgatgcatatttagtacacttgctaaaaatctatcaa 45457503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 43723968 - 43724049
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaacatctatca 242  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||  ||||||||||||||||||||  |||||||    
T  43723968 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatatatttttagtacacttgctaaaattctatca 43724049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 15470726 - 15470798
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgata-gtttttagtacacttgctaaa 233  Q
    ||||||||||||| |||||| |||| || ||| ||||| |||||||||||||  |||||||||| |||||||||    
T  15470726 ttgaaattaacacagtcctcgtggatacgaac-ttattttattacttcgatacatttttagtacccttgctaaa 15470798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 15719122 - 15719043
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    |||| |||||||| |||||| |||| || ||||| ||| ||||||||| |||||||| |||||||||| |||| ||||||||    
T  15719122 ttgagattaacacagtcctcgtggatacgaactt-attttattacttccatagtttt-agtacacttggtaaaaatctatca 15719043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 25820690 - 25820618
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaa 233  Q
    ||||||||||||| |||||| |||| || ||||| ||| ||||||||||||   ||||||||||||||||||||    
T  25820690 ttgaaattaacacagtcctcgtggatacgaactt-attttattacttcgatgcatttttagtacacttgctaaa 25820618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 30926843 - 30926891
Alignment:
Q  193 tttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    |||||| |||||||||||||| ||||| ||||||||||||| ||||||||    
T  30926843 tttattttattacttcgatag-ttttaatacacttgctaaaaatctatca 30926891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 42368510 - 42368477
Alignment:
Q  200 tattacttcgatagtttttagtacacttgctaaa 233  Q
    ||||||||||||||| ||||||||||||||||||    
T  42368510 tattacttcgatagtatttagtacacttgctaaa 42368477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 31427388 - 31427304
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaacatctatcaac 244  Q
    |||| |||||||| ||| || |||| || ||||| ||| ||||||||||||   ||||||||||||||||||||  |||||||||    
T  31427388 ttgagattaacacagtcttcgtggatacgaacttaattttattacttcgatgcatttttagtacacttgctaaaagtctatcaac 31427304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 10068 - 10296
Alignment:
Q  13 cagaggattcgaaagatctagtctcatctctctctatcttttctaaacaactttaattttctgttatttac-ttttatgcacaacaaacctactgcctcg 111  Q
    |||||||||| |||||  ||||||||||||||  ||||||||| ||||||  || | ||| |||||||||| ||||||||| ||||||||||||||||||    
T  10068 cagaggattcaaaagacatagtctcatctctccttatcttttccaaacaatatttaatttatgttatttactttttatgca-aacaaacctactgcctcg 10166  T
Q  112 gacactaaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgat 211  Q
      |||||||||||||||||| |||| ||| | |||||    ||| | | |||| ||||| |  |||||| |||||||||||||  || |||||||| |||    
T  10167 agcactaaaataaactttacacatcctatataataaccatattgctaaattgagattaatagagtcctcgtggaaacaaacttatttttattactttgat 10266  T
Q  212 agtttttagtacacttgctaaacatctatca 242  Q
    || ||||||||||||||||||| ||||||||    
T  10267 ag-ttttagtacacttgctaaatatctatca 10296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 18560104 - 18559989
Alignment:
Q  118 aaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttt 217  Q
    |||||||||||||| |||| ||||| ||||  |  |||||||||||| ||||||||||||||| ||||| | ||||||||||||| ||||||||||||||    
T  18560104 aaaataaactttacacatcctatttaataatgctattgtttacttgagattaacacggtcctcgtggaatcgaactttattatatgacttcgatagtttt 18560005  T
Q  218 tagtacacttgctaaa 233  Q
    ||||||| ||||||||    
T  18560004 tagtacatttgctaaa 18559989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 18560907 - 18560827
Alignment:
Q  153 ttgtttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||||||||||| | ||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18560907 ttgtttacttgagaataacatggtcctcgcggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 18560827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 5796671 - 5796894
Alignment:
Q  16 aggattcgaaagatctagtctcatctctctctatcttttctaaacaactttaattttctgttatttac-ttttatgcacaacaaacctactgcctcggac 114  Q
    |||| ||||||||  ||||||||||||||  ||||||||||||||||  || |||||||||||||||| |||||||||| |||||| || |||||  |||    
T  5796671 aggactcgaaagacttagtctcatctctccatatcttttctaaacaaactttattttctgttatttactttttatgcac-acaaacatattgccttagac 5796769  T
Q  115 actaaaataaactttacgcatcatatttcataacacagttgtttacttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagt 214  Q
    |||   ||||| ||||| |||| ||  |  ||||    ||| | | |||| |||||||| ||| || |||| || |||||  || ||||||||||||||     
T  5796770 act--tataaaatttacacatcctagatattaactttattgctaagttgagattaacacagtcttcgtggatacgaacttatttttattacttcgatag- 5796866  T
Q  215 ttttagtacacttgctaaacatctatca 242  Q
    |||||||||||||||||||  |||||||    
T  5796867 ttttagtacacttgctaaatttctatca 5796894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 48645593 - 48645665
Alignment:
Q  18 gattcgaaagatctagtctcatctctctctatcttttctaaaca-actttaattttctgttatttacttttat 89  Q
    |||||||||||||||||||||||||||  ||| ||||| ||||| |  || ||||||||||||||||||||||    
T  48645593 gattcgaaagatctagtctcatctctccatatattttccaaacatatctttattttctgttatttacttttat 48645665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 26153434 - 26153514
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||||||| |||||||||||||||  ||||||||    
T  26153434 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatagtttt-agtacacttgctaaaagtctatcaa 26153514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 8398100 - 8398170
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  8398100 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 8398170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 11825204 - 11825134
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  11825204 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 11825134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 22232475 - 22232405
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  22232475 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 22232405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 22254264 - 22254334
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  22254264 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 22254334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 4524190 - 4524151
Alignment:
Q  203 tacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  4524190 tacttggatagtttttagtacactttctaaacatctatca 4524151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 243
Target Start/End: Complemental strand, 13907607 - 13907568
Alignment:
Q  204 acttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  13907607 acttctatagtttttagtacacttgctaaatatctatcaa 13907568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 6967315 - 6967394
Alignment:
Q  163 gaaattaaca-cggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||||||||| |||||||| |||| || ||||||||||   ||||||||||| |||| |||||||||| ||| |||||||||    
T  6967315 gaaattaacaacggtcctcgtggatacgaactttattac--tacttcgatagcttttggtacacttgccaaatatctatcaa 6967394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 11397902 - 11397820
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgat-agtttttagtacacttgctaaacatctatca 242  Q
    |||| |||||||| |||||| |||| || ||||| ||| ||||||||||||   ||||||||||||||||||||  |||||||    
T  11397902 ttgagattaacacagtcctcgtggatacgaacttaattttattacttcgatgcatttttagtacacttgctaaaagtctatca 11397820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 17866431 - 17866352
Alignment:
Q  163 gaaattaaca-cggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||||||||| |||||||| |||| || ||||||||||   ||||||||||| |||| |||||||||| ||| |||||||||    
T  17866431 gaaattaacaacggtcctcgtggatacgaactttattac--tacttcgatagcttttggtacacttgccaaatatctatcaa 17866352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 38431679 - 38431758
Alignment:
Q  163 gaaattaaca-cggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||||||||| ||||||||||||| || ||||||||||   ||||||||||| |||| |||||||| | ||| |||||||||    
T  38431679 gaaattaacaacggtcctcatggatacgaactttattac--tacttcgatagcttttggtacactttccaaatatctatcaa 38431758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 6603630 - 6603682
Alignment:
Q  68 attttctgttatttacttttatgcacaacaaacctactgcctcggacactaaaa 121  Q
    |||||||||||||||  |||||||| | |||| |||||||||||||||||||||    
T  6603630 attttctgttatttaaatttatgca-atcaaaactactgcctcggacactaaaa 6603682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 13809324 - 13809276
Alignment:
Q  193 tttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    |||||| |||||||||||||| |||||||||||||||||||  |||||||    
T  13809324 tttattttattacttcgatag-ttttagtacacttgctaaaagtctatca 13809276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 26557772 - 26557844
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgata-gtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| |  ||||| ||| ||||||||||||| |||||||||||||||||||||    
T  26557772 ttgagattaacacagtcctcgtggatatgaactt-attttattacttcgatacgtttttagtacacttgctaaa 26557844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 48645740 - 48645812
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaa 233  Q
    ||||||||||||| |||||| |||| || ||||| ||| ||||||||||||   ||||||||||||||||||||    
T  48645740 ttgaaattaacacagtcctcgtggatacgaactt-attttattacttcgatgcatttttagtacacttgctaaa 48645812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 5826557 - 5826487
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| |  ||||| ||| |||||||||||||| |||||||||||||||||||    
T  5826557 ttgagattaacacagtcctcgtggataagaactt-attttattacttcgatag-ttttagtacacttgctaaa 5826487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 23776170 - 23776241
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| | ||||| |||||  || |||||||||||||| |||||||| ||||||||||    
T  23776170 ttgagattaacacagtcctcgtagaaacgaacttatttttattacttcgatag-ttttagtatacttgctaaa 23776241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 233
Target Start/End: Complemental strand, 118386 - 118222
Alignment:
Q  68 attttctgttatttacttttatgcacaacaaacctactgcctcggacactaaaataaactttacgcatcatatttcataacacagttgtttacttgaaat 167  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| ||| ||||| |||| ||  | |||||    ||||| | |||| ||    
T  118386 attttctgttatttacttttatgcataacaaacatactgcctcgggcactaaaagaaa-tttacacatcctagataataactttattgttgaattgagat 118288  T
Q  168 taacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    ||||||  ||||| |||| || |||||  || ||||||||||||||||||||||||||||| ||||    
T  118287 taacacaatcctcgtggatacgaacttatttttattacttcgatagtttttagtacacttgttaaa 118222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 233
Target Start/End: Complemental strand, 99176 - 99008
Alignment:
Q  68 attttctgttatttacttttatgcacaacaaacctactgcc----tcggacactaaaataaactttacgcatcatatttcataacacagttgtttacttg 163  Q
    |||||||||||||||||||||| ||||||||||||||||||    |||| |||||||| ||| ||||| |||||||  | |||||    ||| | | |||    
T  99176 attttctgttatttacttttatacacaacaaacctactgcctcgatcgggcactaaaagaaa-tttacacatcatagataataactttattgctaaattg 99078  T
Q  164 aaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    | ||||||||  ||||| | || || || ||  || ||||||||||||| ||||||||||||||||||||    
T  99077 agattaacaccatcctcgtagatacgaaattatttttattacttcgataatttttagtacacttgctaaa 99008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 5538616 - 5538535
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaacatctatca 242  Q
    ||||||||||||| ||||||||||| || ||||| ||| |||||||||||||  |||||||||||||||||||| ||||||||    
T  5538616 ttgaaattaacacagtcctcatggatacgaactt-attttattacttcgatacatttttagtacacttgctaaaaatctatca 5538535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 242
Target Start/End: Complemental strand, 14589559 - 14589387
Alignment:
Q  68 attttctgttatttactttt-atgcacaacaaacctactgcctcggacactaaaataaactttacgcatcatatttcataacacagttgtttacttgaaa 166  Q
    ||||| |||||||||||||| ||||||| ||| ||||||||||||| |||||||| ||| ||||| |||| ||     |||||   ||| | | |||| |    
T  14589559 attttatgttatttactttttatgcacaccaa-cctactgcctcgggcactaaaagaaa-tttacacatcctacacattaacattattgctaaattgaga 14589462  T
Q  167 ttaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    ||||||| |||||| || | || ||||| ||| ||||||||||||| |||| ||||||||||||||| ||||||||    
T  14589461 ttaacacagtcctcgtgaatacgaacttaattttattacttcgataatttt-agtacacttgctaaaaatctatca 14589387  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 31981630 - 31981710
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||| |||||||| |||||||| || || ||||| ||| |||||||||||||||||| |||||||||||||||  ||||||||    
T  31981630 ttgagattaacacagtcctcatagatacgaactt-attttattacttcgatagtttt-agtacacttgctaaaagtctatcaa 31981710  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 18695823 - 18695744
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    ||||||||||||  |||||| |||| || ||||| ||| |||||||||||||||||| ||| ||||||||||| ||||||||    
T  18695823 ttgaaattaacatagtcctcgtggatacgaactt-attttattacttcgatagtttt-agtgcacttgctaaaaatctatca 18695744  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 8911964 - 8912004
Alignment:
Q  203 tacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||||||||||| |||||||||||||||||| |||||||||    
T  8911964 tacttcgatagtatttagtacacttgctaaaaatctatcaa 8912004  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 10664264 - 10664304
Alignment:
Q  203 tacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||||||||||| |||||||||||||||||| |||||||||    
T  10664264 tacttcgatagtatttagtacacttgctaaaaatctatcaa 10664304  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 31986557 - 31986639
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaact 245  Q
    |||| |||||||| |||||| || | || ||||| ||| |||||||||||||||||| |||||||||||||||  ||||||||||    
T  31986557 ttgagattaacacagtcctcgtgcatacgaactt-attttattacttcgatagtttt-agtacacttgctaaaagtctatcaact 31986639  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 4868380 - 4868470
Alignment:
Q  15 gaggattcgaaagatctagtctcatctctctctatcttttctaaacaa-ctttaattttctgttatttacttttatgcacaacaaacctact 105  Q
    |||||||||||||| |||||||||||||| | ||||||||| ||| ||  ||||||||    ||||||||||||||||| | ||||||||||    
T  4868380 gaggattcgaaagacctagtctcatctctatatatcttttccaaataatatttaatttctatttatttacttttatgca-atcaaacctact 4868470  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 33883196 - 33883114
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgat-agtttttagtacacttgctaaacatctatca 242  Q
    |||| |||||||| |||||| |||| || ||||| ||| ||||||||||||   ||||||||||||||||||||  |||||||    
T  33883196 ttgagattaacacagtcctcgtggatacgaacttaattttattacttcgatgcatttttagtacacttgctaaaagtctatca 33883114  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 5964526 - 5964605
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    |||| |||||||| ||||||||||| || ||||| ||| |||||||||||||| ||||| ||||||| |||||  |||||||    
T  5964526 ttgagattaacacagtcctcatggatacgaactt-attttattacttcgatag-ttttaatacacttactaaaagtctatca 5964605  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 5980138 - 5980058
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    |||| |||||||| |||||| |||| || ||||| ||  ||||||||||||||||||| |||||||||  |||| |||||||    
T  5980138 ttgagattaacacagtcctcgtggatacgaactt-atgttattacttcgatagtttttggtacacttgtcaaacgtctatca 5980058  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 9467351 - 9467429
Alignment:
Q  163 gaaattaaca-cggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    |||||||||| |||||||| |||| || ||||||||||   ||||||||||| |||| |||||||||| ||| ||||||||    
T  9467351 gaaattaacaacggtcctcgtggatacgaactttattac--tacttcgatagcttttggtacacttgccaaatatctatca 9467429  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 16953961 - 16954014
Alignment:
Q  71 ttctgttatttacttttatgcacaacaaacctactgcctcggacactaaaataa 124  Q
    |||||||||||| ||||||||| | |||| |||||||||| | |||||||||||    
T  16953961 ttctgttatttaattttatgcaaaccaaaactactgcctcaggcactaaaataa 16954014  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 5538763 - 5538691
Alignment:
Q  18 gattcgaaagatctagtctcatctctctctatcttttctaaacaact-ttaattttctgttatttacttttat 89  Q
    ||||| ||||| |||||||||||||||  ||| ||||| |||||  | || ||||||||||||||||||||||    
T  5538763 gattcaaaagacctagtctcatctctccatatattttccaaacatatctttattttctgttatttacttttat 5538691  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 14188441 - 14188511
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||| | |||||| |||| || ||||| ||| |||||||||||||| |||||||||||||||||||    
T  14188441 ttgagattaacgcagtcctcgtggatacgaactt-attttattacttcgatag-ttttagtacacttgctaaa 14188511  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 30645755 - 30645825
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| ||||||||||||| |||| |||||||||||||||    
T  30645755 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgataatttt-agtacacttgctaaa 30645825  T

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Target: scaffold0034 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 48399 - 48302
Alignment:
Q  13 cagaggattcgaaagatctagtctcatctctctctatcttttctaaacaactttaattttctg-ttatttacttttatgcacaacaaacctactgcctc 110  Q
    ||||||||| ||| || |||||||||||||||  ||| ||||||||||||| || || ||| | ||||||||||||||||| | |||||||||||||||    
T  48399 cagaggatttgaatgacctagtctcatctctccatatattttctaaacaacctttatattccgtttatttacttttatgca-atcaaacctactgcctc 48302  T

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Target: scaffold0014 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 223989 - 224069
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaa 243  Q
    |||| |||||||| |||||||| || || ||||| ||| |||||||||||||||||| |||||||||||||||  ||||||||    
T  223989 ttgagattaacacagtcctcatagatacgaactt-attttattacttcgatagtttt-agtacacttgctaaaagtctatcaa 224069  T

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Target: scaffold0014; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 228915 - 228997
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaact 245  Q
    |||| |||||||| |||||| || | || ||||| ||| |||||||||||||||||| |||||||||||||||  ||||||||||    
T  228915 ttgagattaacacagtcctcgtgcatacgaactt-attttattacttcgatagtttt-agtacacttgctaaaagtctatcaact 228997  T

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Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 52730 - 52651
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    ||||||||||||  |||||| |||| || ||||| ||| |||||||||||||||||| ||| ||||||||||| ||||||||    
T  52730 ttgaaattaacatagtcctcgtggatacgaactt-attttattacttcgatagtttt-agtgcacttgctaaaaatctatca 52651  T

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Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 67679 - 67600
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    |||| |||||||| |||||| |||| || ||||| ||| ||||||||| |||||||| |||||||||| |||| ||||||||    
T  67679 ttgagattaacacagtcctcgtggatacgaactt-attttattacttccatagtttt-agtacacttggtaaaaatctatca 67600  T

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Target: scaffold0737 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 7189 - 7118
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || |||||  || |||||||||||||| |||||||||||||||||||    
T  7189 ttgagattaacaccgtcctcgtggatacgaacttatttttattacttcgatag-ttttagtacacttgctaaa 7118  T

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Target: scaffold0045 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 90046 - 90129
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatag-tttttagtacacttgctaaacatctatcaac 244  Q
    |||| |||||||| |||||| |||| |||||||| ||| ||||||||||||   ||||||||||||||||||||  |||||||||    
T  90046 ttgagattaacacagtcctcgtggatacaaactt-attttattacttcgatgcatttttagtacacttgctaaaagtctatcaac 90129  T

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Target: scaffold0401 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 4565 - 4625
Alignment:
Q  182 tggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatcaac 244  Q
    |||| |||||||||||||   |||||||||||||||| |||||||||| ||| ||||||||||    
T  4565 tggatacaaactttattac--tacttcgatagttttttgtacacttgccaaatatctatcaac 4625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 7649 - 7596
Alignment:
Q  68 attttctgttatttactttt-atgcacaacaaacctactgcctcggacactaaaa 121  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||||    
T  7649 attttctgttatttactttttatgcacaccaa-cctactgcctcgggcactaaaa 7596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 33807 - 33730
Alignment:
Q  163 gaaattaaca-cggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaacatctatca 242  Q
    |||||||||| |||||||| |||| |||||||||||  || ||||||||||| |||| |||||||||| ||| ||||||||    
T  33807 gaaattaacaacggtcctcgtggatacaaactttat--tactacttcgatag-ttttggtacacttgccaaatatctatca 33730  T

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Target: scaffold0360 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 6555 - 6625
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || || |||||| ||||||||||||| ||||||||||||||| ||||    
T  6555 ttgagattaacacagtcctcgtggatacgaa-tttattttattacttcgata-tttttagtacacttggtaaa 6625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 13887 - 13957
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||||| || ||||||||||||||    
T  13887 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatagttctt-gtacacttgctaaa 13957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 27903 - 27973
Alignment:
Q  161 ttgaaattaacacggtcctcatggaaacaaactttattatattacttcgatagtttttagtacacttgctaaa 233  Q
    |||| |||||||| |||||| |||| || ||||| ||| |||||||||||||||| || ||||||||||||||    
T  27903 ttgagattaacacagtcctcgtggatacgaactt-attttattacttcgatagttctt-gtacacttgctaaa 27973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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