View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10382_high_5 (Length: 415)
Name: NF10382_high_5
Description: NF10382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10382_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 43983761 - 43984147
Alignment:
| Q |
18 |
cattgctcaattgtaatgtgcaaaatggctatatgggtctgttacaaagcttttgggaagaggaatgacaaataagatgaacataaaagttnnnnnnnta |
117 |
Q |
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| T |
43983761 |
cattgctcaattgtaatgtgcaaaatggctatatgggtctgttacaaagcttttgggaagaggaatgacaaataagatgaacataaaagttaaaaaaata |
43983860 |
T |
|
| Q |
118 |
caatccttcaattgatccaaaataaaatgacttttattaaacataaacaatgccaaatacaaaagtataattaatccaagtaataagagatttgagctcc |
217 |
Q |
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| T |
43983861 |
caatccttcaattgatccaaaataaaatgacttttattaaacataaacaatgccaaatacaaaagtataattgatccaagtaataagagatttaagctcc |
43983960 |
T |
|
| Q |
218 |
ttaaacctaaggttcagagtttaattattgactctcacatatttcccaacgaaattaattactgctaagcggtgaaaatttcttaccaatatcgtgctaa |
317 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43983961 |
ttaaacataaggttcagagtttaattattgactctcacatatttcccaacgaaattaattactgctaagcggtgaaaatttcgtaccaatatcgtgctaa |
43984060 |
T |
|
| Q |
318 |
accaaaaaagatgtagcaaaatcagacacggcatcttatgcagatatcactcaattctcttggactcctactcttctctgctcctcc |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43984061 |
accaaaaaagatgtagcaaaatcagacacggcatcttatgcagatatcactcaattctcttggactcctactcttctcttctcctcc |
43984147 |
T |
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