View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10382_high_9 (Length: 351)
Name: NF10382_high_9
Description: NF10382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10382_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 18045460 - 18045640
Alignment:
| Q |
16 |
agcacagaggaaagtaccatcgttgttaagctgagtgagaggaatgaactcaaagtatccattttgaggaaacacgacataagttgccaattcaggggga |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
18045460 |
agcacaaaggaaagtaccatcgttgttaagctgagtgagaggaatgaactcaaagtatccattttgaggaaacacggcataagttgcaaattcaggggga |
18045559 |
T |
|
| Q |
116 |
agttcagggttaacatttgcagctatgaacccttcagaagctccatagatagaagttactagaggcagttcccctgcataa |
196 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18045560 |
agtttagggttaacatttgcagctatgaacccttcagaagctccgtagatagaagtcactagaggcagttcccctgcataa |
18045640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 28 - 288
Target Start/End: Original strand, 13979615 - 13979875
Alignment:
| Q |
28 |
agtaccatcgttgttaagctgagtgagaggaatgaactcaaagtatccattttgaggaaacacgacataagttgccaattcagggggaagttcagggtta |
127 |
Q |
| |
|
|||||| || || |||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
13979615 |
agtaccctcattcttaacctgtgtgagaggaatgaactcaaagtatccattttgaggaaacaaaacataggttgccaattcaaggggaagtttagggtta |
13979714 |
T |
|
| Q |
128 |
acatttgcagctatgaacccttcagaagctccatagatagaagttactagaggcagttcccctgcataatgcctgaattttcctatatactgctccattg |
227 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |||| ||| | || |||||||| ||||| || ||||||| ||| ||||||| | |
|
|
| T |
13979715 |
atatttgcagctatgaacccttcagaagctccatagatagaagtcactaaaggtaactctcctgcatagtgcctcaactttcctaaatatggctccatcg |
13979814 |
T |
|
| Q |
228 |
acccgctcatgattccgaaaatgtatttagcattaggaaacaactctggtatcaaaccata |
288 |
Q |
| |
|
|||| |||||||||| ||||||| || |||||||||||||||||||||| ||||||||| |
|
|
| T |
13979815 |
accccgtcatgattccataaatgtacttcgcattaggaaacaactctggtaacaaaccata |
13979875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 48367981 - 48367861
Alignment:
| Q |
43 |
aagctgagtgagaggaatgaactcaaagtatccattttgaggaaacacgacataagttgccaattcagggggaagttcagggttaacatttgcagctatg |
142 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| ||||||||| |||| | ||||||||||||||||| |||| || ||||||||||||||||| || |
|
|
| T |
48367981 |
aagctgtgtgagaggaatgaactcaaagtaaccaatttgaggaagcacggcgtaagttgccaattcaggtggaatttttgggttaacatttgcagcaatc |
48367882 |
T |
|
| Q |
143 |
aacccttcagaagctccatag |
163 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
48367881 |
cacccttcagaagctccatag |
48367861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University