View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10382_low_1 (Length: 633)
Name: NF10382_low_1
Description: NF10382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10382_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 146 - 620
Target Start/End: Original strand, 28028784 - 28029258
Alignment:
| Q |
146 |
taaataacatcaaacttttccattagttgtgaccttcaagtgtaacacttgagtgtcatttaagtgttgaagaagtgctgattttagtcatagcctgtaa |
245 |
Q |
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| T |
28028784 |
taaataacatcaaacttttccattagttgtgaccttcaagtgtaacacttgagtgtcatttaagtgttgaagaagtgctgattttagtcatagccggtaa |
28028883 |
T |
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| Q |
246 |
acaataattcttaaatagaacaccagatgaggaataggtgttagtaccagaaatgtgtccagcactccacttacagaagtgtttgttttcataggccatg |
345 |
Q |
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| T |
28028884 |
acagtaattcttaaatagaacaccagatgaggagtaggtgttagtaccagaaatgtgtccagcactccacttacagaagtgtttgttttcataggccatg |
28028983 |
T |
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| Q |
346 |
acaattgacaaccatggaccatcaatcaattttatttctaattggttcgatnnnnnnnnnnnnnntatgaagcaagaaacctcagtctgacgattgacgg |
445 |
Q |
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| T |
28028984 |
acaattgacaaccacggaccatcaatcaattttatttctaattggttcgataacaaactaaaaaatatgaagcaagaaacctcagtctgatgattgacgg |
28029083 |
T |
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| Q |
446 |
tacatcattaaaattcaaacctgacatgtcttgtctttcttagaaatatgcaatagaggcctatactcatcacactgctcttgtaatagaactgaagtag |
545 |
Q |
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| T |
28029084 |
tacatcattaaaattcaaacctgacatgtcttgtctttcttagaaatatgcaatagaggcctatactcatcacactgctcttgtaatagaactgaagtag |
28029183 |
T |
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| Q |
546 |
gaaagttctgagatgaataactagtacaccaggcggtgactgtaggcgcaacttgttcccggagcatcaaaactg |
620 |
Q |
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| T |
28029184 |
gaaagttctgagatgaataactagtacaccaggcggtgactgtaggcgcaacttgttcccggagcatcaaaactg |
28029258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 28028650 - 28028724
Alignment:
| Q |
12 |
agagaagaaaaatgaatttgagcaaataaagatggataactctaatacagccaaggttgaataagtgtacttaac |
86 |
Q |
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| T |
28028650 |
agagaagaaaaatgaatttgagcaaataaagatggataactctaatacagccaaggttgaataagtgtacttaac |
28028724 |
T |
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