View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10382_low_10 (Length: 376)
Name: NF10382_low_10
Description: NF10382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10382_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 4 - 357
Target Start/End: Complemental strand, 4770593 - 4770240
Alignment:
| Q |
4 |
ccaacagatgacgatgaagtgaaagttgaaccatatgaaaatggtggatcatttctttacaaagcatctatcagctgcgattatcgaccagaacttctat |
103 |
Q |
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| T |
4770593 |
ccaacagacgatgatgaagtgaaagttgaaccatatgaaaatggtggatcatttctttacaaagcatctatcagctgcgattatcgaccagaacttctat |
4770494 |
T |
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| Q |
104 |
ctgatctaagacaaactcttgataaacttcaactacaattggtaagggaagaaatatcaactttgggagacagggttaagaatgaatttgtctacacatg |
203 |
Q |
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| T |
4770493 |
ctgatctaagacaaactcttgataaacttcaactacaattggtaagggaagaaatatcaactttgggagacagggttaagaatgaatttgtctacacatg |
4770394 |
T |
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| Q |
204 |
ttgtaaagtagacatttatgatattgaactatgtccacttattgcaagtaatgttcatcaggcactgagttctgtactggaaagggcttctacctcgatg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4770393 |
ttgtaaagtagacatttatgatattgaactatgtccacttattgcaagtaatgttcatcaggcactgagttctgtactggaaagggcttctacctcgatg |
4770294 |
T |
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| Q |
304 |
gactactcgttaagaacaccacgtccttgcaaacagatgcagcagacatctact |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4770293 |
gactactcgttaagaacaccacgtccttgcaaacagatgcagcagacatctact |
4770240 |
T |
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