View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10382_low_11 (Length: 359)

Name: NF10382_low_11
Description: NF10382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10382_low_11
NF10382_low_11
[»] chr4 (21 HSPs)
chr4 (12-358)||(2733215-2733570)
chr4 (22-157)||(17883973-17884107)
chr4 (196-284)||(52831430-52831519)
chr4 (196-283)||(24418251-24418339)
chr4 (19-100)||(3155505-3155586)
chr4 (13-72)||(30066881-30066940)
chr4 (13-99)||(2987085-2987171)
chr4 (31-96)||(6364063-6364128)
chr4 (55-96)||(8422928-8422969)
chr4 (80-153)||(28581945-28582017)
chr4 (12-100)||(26520316-26520404)
chr4 (56-100)||(52326196-52326240)
chr4 (203-285)||(52986492-52986575)
chr4 (19-85)||(17751224-17751290)
chr4 (19-93)||(44863056-44863130)
chr4 (112-157)||(8468942-8468987)
chr4 (19-92)||(49004065-49004138)
chr4 (21-89)||(21731751-21731819)
chr4 (122-166)||(27623642-27623686)
chr4 (203-270)||(31736161-31736229)
chr4 (53-157)||(56480284-56480387)
[»] chr1 (16 HSPs)
chr1 (21-97)||(10744212-10744288)
chr1 (12-136)||(48064204-48064327)
chr1 (55-157)||(49888705-49888806)
chr1 (12-100)||(46252769-46252857)
chr1 (12-159)||(37841893-37842039)
chr1 (12-135)||(38578423-38578544)
chr1 (30-98)||(8852773-8852841)
chr1 (19-67)||(38247345-38247393)
chr1 (22-67)||(14331684-14331729)
chr1 (12-100)||(4549761-4549849)
chr1 (24-104)||(9507083-9507163)
chr1 (231-283)||(21516702-21516754)
chr1 (122-157)||(37241853-37241888)
chr1 (22-99)||(5894251-5894328)
chr1 (43-96)||(23544731-23544784)
chr1 (58-154)||(42556665-42556760)
[»] chr8 (23 HSPs)
chr8 (21-104)||(26215400-26215483)
chr8 (196-283)||(28444788-28444876)
chr8 (26-100)||(3936758-3936832)
chr8 (19-100)||(37444502-37444583)
chr8 (39-100)||(41475147-41475208)
chr8 (19-67)||(14956425-14956473)
chr8 (19-102)||(34236064-34236148)
chr8 (56-155)||(4558737-4558835)
chr8 (195-257)||(13895969-13896032)
chr8 (19-136)||(900749-900864)
chr8 (80-154)||(2699269-2699342)
chr8 (24-90)||(8216787-8216853)
chr8 (24-98)||(16210975-16211049)
chr8 (196-285)||(25019638-25019728)
chr8 (69-147)||(27728062-27728139)
chr8 (25-103)||(35453707-35453784)
chr8 (20-74)||(40859831-40859885)
chr8 (43-100)||(8407336-8407393)
chr8 (59-104)||(31315536-31315581)
chr8 (80-157)||(31862456-31862532)
chr8 (19-68)||(40637422-40637471)
chr8 (189-268)||(13544113-13544193)
chr8 (189-268)||(13680280-13680360)
[»] chr3 (16 HSPs)
chr3 (19-154)||(40665331-40665465)
chr3 (198-282)||(43822505-43822590)
chr3 (14-99)||(30574002-30574085)
chr3 (12-99)||(49465751-49465838)
chr3 (198-284)||(32645721-32645807)
chr3 (23-96)||(9279417-9279489)
chr3 (52-157)||(44061054-44061158)
chr3 (70-154)||(1816536-1816619)
chr3 (16-68)||(12833883-12833935)
chr3 (19-166)||(35127393-35127539)
chr3 (112-166)||(2100177-2100231)
chr3 (196-226)||(20873211-20873241)
chr3 (56-100)||(2128338-2128382)
chr3 (46-98)||(23808140-23808192)
chr3 (19-67)||(29520608-29520656)
chr3 (19-67)||(31365402-31365450)
[»] chr2 (22 HSPs)
chr2 (21-100)||(39567807-39567886)
chr2 (38-135)||(4026738-4026834)
chr2 (122-166)||(32757484-32757528)
chr2 (19-67)||(41407193-41407241)
chr2 (23-157)||(42457854-42457987)
chr2 (56-141)||(5998753-5998833)
chr2 (80-157)||(36863656-36863732)
chr2 (55-155)||(5133710-5133809)
chr2 (55-166)||(10143110-10143220)
chr2 (55-102)||(18962123-18962170)
chr2 (203-257)||(40909915-40909970)
chr2 (55-153)||(3102631-3102728)
chr2 (12-94)||(9833050-9833132)
chr2 (83-141)||(34101983-34102041)
chr2 (196-257)||(44984346-44984408)
chr2 (19-68)||(5599179-5599228)
chr2 (196-284)||(31062919-31063008)
chr2 (55-100)||(36114357-36114402)
chr2 (56-96)||(5045248-5045288)
chr2 (19-75)||(19608737-19608793)
chr2 (80-156)||(37292379-37292454)
chr2 (56-96)||(40672887-40672927)
[»] chr6 (10 HSPs)
chr6 (26-100)||(32206107-32206181)
chr6 (63-136)||(29296345-29296417)
chr6 (122-166)||(13907422-13907466)
chr6 (19-67)||(18076088-18076136)
chr6 (63-154)||(1402942-1403032)
chr6 (17-100)||(4163075-4163158)
chr6 (17-100)||(4224696-4224779)
chr6 (14-100)||(264268-264354)
chr6 (55-136)||(2514640-2514720)
chr6 (19-67)||(34430608-34430656)
[»] chr5 (18 HSPs)
chr5 (19-97)||(28776877-28776955)
chr5 (19-100)||(465856-465937)
chr5 (19-100)||(42582814-42582895)
chr5 (196-266)||(9004814-9004885)
chr5 (12-157)||(6593195-6593338)
chr5 (12-86)||(42573880-42573954)
chr5 (19-72)||(39105366-39105419)
chr5 (12-72)||(1618987-1619047)
chr5 (12-72)||(10771993-10772053)
chr5 (21-67)||(7319141-7319187)
chr5 (31-100)||(11835191-11835260)
chr5 (84-157)||(24030432-24030505)
chr5 (198-282)||(32882698-32882783)
chr5 (19-100)||(40864624-40864705)
chr5 (57-166)||(42646855-42646963)
chr5 (20-100)||(1465106-1465186)
chr5 (85-157)||(2568625-2568697)
chr5 (12-100)||(5963369-5963457)
[»] chr7 (16 HSPs)
chr7 (12-102)||(7612354-7612445)
chr7 (22-96)||(42656420-42656494)
chr7 (19-67)||(21568758-21568806)
chr7 (203-269)||(883731-883798)
chr7 (203-269)||(1243060-1243127)
chr7 (112-162)||(18350733-18350783)
chr7 (19-65)||(47795859-47795905)
chr7 (56-128)||(28613594-28613665)
chr7 (55-157)||(5628597-5628698)
chr7 (190-283)||(25659419-25659513)
chr7 (190-283)||(44235500-44235594)
chr7 (55-96)||(29574692-29574733)
chr7 (19-136)||(44777034-44777150)
chr7 (55-95)||(7513572-7513612)
chr7 (19-67)||(45806607-45806655)
chr7 (13-93)||(47510007-47510087)
[»] scaffold0024 (1 HSPs)
scaffold0024 (44-100)||(21365-21421)
[»] scaffold0590 (1 HSPs)
scaffold0590 (55-104)||(1157-1206)
[»] scaffold0275 (1 HSPs)
scaffold0275 (55-104)||(2769-2818)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 12 - 358
Target Start/End: Original strand, 2733215 - 2733570
Alignment:
Q  12 cttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgc 111  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2733215 cttaatatgcagcttatagcataagcacttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgc 2733314  T
Q  112 ataagttattagttgttttcataagatatcatagagagcttatgaacatgtcatacgctctttgactctttccacaaattaaattataagttacttgaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2733315 ataagttattagttgttttcataagatatcatagagagcttatgaacatgtcataagctctttgactctttccacaaattaaattataagttacttgaat 2733414  T
Q  212 tagcttatcaaaaacttattaagctcattaaaataagttataagctggtgtaaaaatgagaattaccaaacaaacaggtctttcttaatcatcttaataa 311  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2733415 tagcttatcaaaaactgattaagctcattaaaataagttataagctggtgtaaaaatgacaattaccaaacaaacaggtctttcttaatcatcttaataa 2733514  T
Q  312 gctaatttttacgtcta---------acacaaaatgaatggaatgaaaagaattat 358  Q
    |||||||||||||||||         ||||||||||||||||||||||||||||||    
T  2733515 gctaatttttacgtctaatcaaacagacacaaaatgaatggaatgaaaagaattat 2733570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 17883973 - 17884107
Alignment:
Q  22 agcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttatt 121  Q
    |||||||||||||||  ||| ||||| || |  || |||| ||||| |||| ||| | ||||||||||||||||||||| | | ||||| |||||||||     
T  17883973 agcttatagcataaggacttatcatggtaagtgctcatgtgtaagctatttctataacaaaagataaaataaagttaaattgt-ttttgtataagttatc 17884071  T
Q  122 agttgttttcataagatatcatagagagcttatgaa 157  Q
    ||||||||||||||| |||  | |||||||||||||    
T  17884072 agttgttttcataagctatattggagagcttatgaa 17884107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 52831519 - 52831430
Alignment:
Q  196 tataagttacttgaattagcttatcaaaaa-cttattaagctcattaaaataagttataagctggtgtaaaaatgagaattaccaaacaa 284  Q
    |||||| ||||||||||||||||||||||| |||  ||||||||| |||||||| || ||||| ||||||||||||   |||||||||||    
T  52831519 tataagctacttgaattagcttatcaaaaacctttataagctcatgaaaataagctacaagctcgtgtaaaaatgaccgttaccaaacaa 52831430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 24418251 - 24418339
Alignment:
Q  196 tataagttacttgaattagcttatcaaaaacttat-taagctcattaaaataagttataagctggtgtaaaaatgagaattaccaaaca 283  Q
    |||||| ||||||||||||||||||||||||   | ||||||||  |||||||| |||||||| |||||||||||| ||||| ||||||    
T  24418251 tataagctacttgaattagcttatcaaaaaccgctataagctcaagaaaataagatataagcttgtgtaaaaatgacaattagcaaaca 24418339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 3155505 - 3155586
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||||||||||| | |||||||| |||||||| |||  ||||||||||| |||| |||   |||||||||||||||||||||    
T  3155505 tgcagcttatagtacaagcgcttatcatgataagcatgtatgtataagctatttctatagcaaaagataaaataaagttaaa 3155586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 30066940 - 30066881
Alignment:
Q  13 ttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaattt 72  Q
    ||||| ||||||||||||||||||||||| | |||||| |||||| ||||||||| ||||    
T  30066940 ttaatttgcagcttatagcataagcgcttataatgataagcacttgtgtataagctattt 30066881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 2987085 - 2987171
Alignment:
Q  13 ttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaa 99  Q
    ||||| ||||||||||| |||||| | || |||||||| |||||||| ||||||| |||| ||  | |||| |||||||||||||||    
T  2987085 ttaatttgcagcttataacataagtgtttatcatgataagcacttatttataagctatttctacaacaaaaaataaaataaagttaa 2987171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 6364063 - 6364128
Alignment:
Q  31 cataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagt 96  Q
    |||||| |||| ||| |||| |||||||||||||||| |||| ||| | |||||||||||||||||    
T  6364063 cataagtgcttatcaagataagcacttatgtataagctatttctataacaaaagataaaataaagt 6364128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 8422969 - 8422928
Alignment:
Q  55 cttatgtataagcaatttttatgaaaaaagataaaataaagt 96  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  8422969 cttatgtataagctatttttataaaaaaagataaaataaagt 8422928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 28582017 - 28581945
Alignment:
Q  80 aaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagctta 153  Q
    ||||||||||||||||| ||||||| ||  | ||| ||||| ||||||||||| ||| ||||||||||||||||    
T  28582017 aaaagataaaataaagtcaaactattttcag-atatgttatgagttgttttcaaaagctatcatagagagctta 28581945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 26520404 - 26520316
Alignment:
Q  12 cttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||||| ||| |||| ||||||||| | || |||||||| |||||||||||||| |  ||| ||| | ||||||| |||||||||||||    
T  26520404 cttaatttgctgcttctagcataagtgtttatcatgataagcacttatgtataaactgtttctataacaaaagatgaaataaagttaaa 26520316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 52326240 - 52326196
Alignment:
Q  56 ttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||    
T  52326240 ttatgtataagctattttaatgataaaagataaaataaagttaaa 52326196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 285
Target Start/End: Original strand, 52986492 - 52986575
Alignment:
Q  203 tacttgaattagcttatcaaaaacttat-taagctcattaaaataagttataagctggtgtaaaaatgagaattaccaaacaaa 285  Q
    |||||||| ||||||||||||||||  | ||| ||||| |||  ||||||||| || |||||||||||| ||||| ||||||||    
T  52986492 tacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaacaaa 52986575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 17751290 - 17751224
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaaga 85  Q
    ||||||||||||||||||| ||||| |||||| || ||||| ||||||| |||| ||| | ||||||    
T  17751290 tgcagcttatagcataagcacttgtaatgataagcgcttatttataagctatttctataataaaaga 17751224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 44863130 - 44863056
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataa 93  Q
    |||||||||||||| |||| |||||||||||| |  |||||| |||||| ||||||||  |||||| ||| ||||    
T  44863130 tgcagcttatagcacaagcacttgtcatgataagtgcttatgcataagctatttttatagaaaaaggtaagataa 44863056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 8468942 - 8468987
Alignment:
Q  112 ataagttattagttgttttcataagatatcatagagagcttatgaa 157  Q
    ||||| ||||||||||||||||||| |||  |||||||||||||||    
T  8468942 ataagctattagttgttttcataagttattctagagagcttatgaa 8468987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 49004138 - 49004065
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaata 92  Q
    ||||| |||||||| | |||||| | |||||| || |||||||||||||||||| |||   |||||||||||||    
T  49004138 tgcagattatagcacatgcgcttataatgataagcgcttatgtataagcaatttctatagcaaaagataaaata 49004065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 21731819 - 21731751
Alignment:
Q  21 cagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaa 89  Q
    |||||||||||| |||||||| |||||||| |  |||| |||||||| ||||||||   ||||||||||    
T  21731819 cagcttatagcacaagcgcttatcatgataagtgcttacgtataagctatttttatagcaaaagataaa 21731751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 27623642 - 27623686
Alignment:
Q  122 agttgttttcataagatatcatagagagcttatgaacatgtcata 166  Q
    ||||||||||||||| |||| | |||||||||||| |||||||||    
T  27623642 agttgttttcataagttatcctggagagcttatgagcatgtcata 27623686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 31736161 - 31736229
Alignment:
Q  203 tacttgaattagcttatcaaaaa-cttattaagctcattaaaataagttataagctggtgtaaaaatga 270  Q
    ||||||||||||||||| ||||| | |  ||||||||| ||||||||||||||| | |||||| |||||    
T  31736161 tacttgaattagcttataaaaaatcgttataagctcatgaaaataagttataagtttgtgtaacaatga 31736229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 56480284 - 56480387
Alignment:
Q  53 cacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagctt 152  Q
    |||||| |||||||| ||||  || | |||||| |||||||||||||| | | || || ||||||||| || |||||||||||  |||| | ||||||||    
T  56480284 cacttacgtataagctatttccataacaaaagacaaaataaagttaaattgt-ttatgtataagttataagctgttttcataaactatcttggagagctt 56480382  T
Q  153 atgaa 157  Q
    |||||    
T  56480383 atgaa 56480387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 10744212 - 10744288
Alignment:
Q  21 cagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagtt 97  Q
    ||||||||||||||||||||| |||||| | |  || |||||||||| ||||| |||||||||||||||||||||||    
T  10744212 cagcttatagcataagcgcttatcatgacaagtgctaatgtataagctattttgatgaaaaaagataaaataaagtt 10744288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 48064204 - 48064327
Alignment:
Q  12 cttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgc 111  Q
    |||||| ||||||||||||||||||| ||| |||||||  |  || ||||| || |||||| |||   ||||||||||||||||| ||||||| |||||     
T  48064204 cttaatttgcagcttatagcataagcccttatcatgattagtcctaatgtagaaacaatttctatagcaaaagataaaataaagtaaaactat-ttttgt 48064302  T
Q  112 ataagttattagttgttttcataag 136  Q
    ||||||||| ||||| |||||||||    
T  48064303 ataagttataagttgatttcataag 48064327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 157
Target Start/End: Original strand, 49888705 - 49888806
Alignment:
Q  55 cttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttat 154  Q
    ||||||||||||| |||| | || ||||||||||||||||||| || | | ||| | ||||| ||||||||||||||||||| |||| |||||| |||||    
T  49888705 cttatgtataagctatttctttggaaaaagataaaataaagtttaattgt-tttcgtataagctattagttgttttcataagctatcttagagaacttat 49888803  T
Q  155 gaa 157  Q
    |||    
T  49888804 gaa 49888806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 46252857 - 46252769
Alignment:
Q  12 cttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||||| | |||||||||| ||||| | |  |||||||||||||| ||||||| || |||||||| | |||||||||||||||||||||    
T  46252857 cttaattttcagcttatagtataagtgttaatcatgatatgcactaatgtataggctatttttataacaaaagataaaataaagttaaa 46252769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 37841893 - 37842039
Alignment:
Q  12 cttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgc 111  Q
    |||||| ||||||| ||||||||||| ||| |||||||| | ||| |||||||||| |||  ||| | ||| ||||||||||||||||| | | ||| |     
T  37841893 cttaatttgcagctaatagcataagcacttatcatgataagtactcatgtataagctattcctataacaaatgataaaataaagttaaattgt-tttcgt 37841991  T
Q  112 ataagttattagttgttttcataagatatcatagagagcttatgaaca 159  Q
    ||||| |||  ||||||  |||||| |||||| || ||||||||||||    
T  37841992 ataagctatatgttgttcgcataagctatcatggacagcttatgaaca 37842039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 38578423 - 38578544
Alignment:
Q  12 cttaatatgcagcttatagcataagcgcttgtcatgata-tgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttg 110  Q
    |||||| | ||||||||||||||||||||| |||||||| |  ||||  |||||||| |||| ||| | ||||||||| ||||||||||| ||| |||||    
T  38578423 cttaatttacagcttatagcataagcgcttatcatgataataaactt--gtataagctatttctataacaaaagataacataaagttaaattat-ttttg 38578519  T
Q  111 cataagttattagttgttttcataa 135  Q
     ||||| ||| |||||||| |||||    
T  38578520 tataagctataagttgtttacataa 38578544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 8852773 - 8852841
Alignment:
Q  30 gcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagtta 98  Q
    |||||||||||| ||||||||  |||| |||||||||| |||||||  | |||||||||||||||||||    
T  8852773 gcataagcgcttatcatgataaacactaatgtataagctatttttacaacaaaagataaaataaagtta 8852841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 38247345 - 38247393
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagc 67  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  38247345 tgcagcttatagcacaagcacttatcatgatatgcacttatgtataagc 38247393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 14331684 - 14331729
Alignment:
Q  22 agcttatagcataagcgcttgtcatgatatgcacttatgtataagc 67  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||||    
T  14331684 agcttatagcacaagcgcttctcatgataagcacttatgtataagc 14331729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 4549761 - 4549849
Alignment:
Q  12 cttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||||| ||||||||||||||||| |||||  || ||||    |||||||| |||| |||| ||| | |||||||||||||||||||||    
T  4549761 cttaatttgcagcttatagcataaacgcttagcacgataaatgcttatgtacaagctatttctataacaaaagataaaataaagttaaa 4549849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 9507163 - 9507083
Alignment:
Q  24 cttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactat 104  Q
    ||||||||||||| |||| |||| |||  |||| |||||||||| |||| ||| | ||||| |||||||| ||||||||||    
T  9507163 cttatagcataagtgcttatcataataaacactcatgtataagctatttctataacaaaagttaaaataatgttaaactat 9507083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 21516702 - 21516754
Alignment:
Q  231 taagctcattaaaataagttataagctggtgtaaaaatgagaattaccaaaca 283  Q
    ||||||||| ||| ||||||||||||| ||| |||||||| ||||||||||||    
T  21516702 taagctcatcaaattaagttataagctcgtgaaaaaatgacaattaccaaaca 21516754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 157
Target Start/End: Complemental strand, 37241888 - 37241853
Alignment:
Q  122 agttgttttcataagatatcatagagagcttatgaa 157  Q
    |||||||||||||||||||| |||||||||||||||    
T  37241888 agttgttttcataagatatcctagagagcttatgaa 37241853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 5894328 - 5894251
Alignment:
Q  22 agcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaa 99  Q
    ||||||||||| ||| |||| |||||||| || ||||||||||||| |||| ||||     |||||||||||||||||    
T  5894328 agcttatagcacaagtgcttatcatgataagcgcttatgtataagctatttctatggtggcagataaaataaagttaa 5894251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 23544784 - 23544731
Alignment:
Q  43 tcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagt 96  Q
    |||||||| || ||||||||||||| |||| |||| ||||||||||||| ||||    
T  23544784 tcatgataagcgcttatgtataagctatttctatggaaaaagataaaattaagt 23544731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 42556760 - 42556665
Alignment:
Q  58 atgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttat 154  Q
    |||||||||  |||| ||||| ||||||| ||||||| | ||||||  ||||  ||||| ||| ||||||||||||||| |||||| ||||| ||||    
T  42556760 atgtataagttatttctatgacaaaagatgaaataaaatcaaactac-ttttatataagctataagttgttttcataagctatcatggagagtttat 42556665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 26215400 - 26215483
Alignment:
Q  21 cagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactat 104  Q
    ||||||||||||  ||||||| | |||||| || ||||||||||||| |||| ||| | |||||||||||||||||||||||||    
T  26215400 cagcttatagcacgagcgcttataatgataagcgcttatgtataagctatttctataacaaaagataaaataaagttaaactat 26215483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 28444788 - 28444876
Alignment:
Q  196 tataagttacttgaattagcttatcaaaaacttat-taagctcattaaaataagttataagctggtgtaaaaatgagaattaccaaaca 283  Q
    |||||| ||||| |||||||||||||||| | | | ||||||||| |||||||| ||||||||  ||||||||||||| ||||||||||    
T  28444788 tataagctacttaaattagcttatcaaaaccctctctaagctcataaaaataagctataagctcttgtaaaaatgagagttaccaaaca 28444876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 3936758 - 3936832
Alignment:
Q  26 tatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||| ||||||||||| |||||||| |||||||||||||| | |||| ||| | ||| |||||||||||| ||||    
T  3936758 tatatcataagcgcttatcatgataggcacttatgtataatctatttctataacaaaggataaaataaagctaaa 3936832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 37444583 - 37444502
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    ||||| ||| ||||||||| ||| |||||||| || ||||||||||||| |||  ||| | |||||||||| ||||||||||    
T  37444583 tgcaggttaaagcataagcacttatcatgataagcgcttatgtataagctattactataacaaaagataaagtaaagttaaa 37444502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 41475208 - 41475147
Alignment:
Q  39 cttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||||||||||| |||||||||||||||| | ||||||   ||||||||||||| |||||||    
T  41475208 cttgtcatgataagcacttatgtataagctaattttatagcaaaagataaaatacagttaaa 41475147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 14956473 - 14956425
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagc 67  Q
    |||||||||||||| || ||||| |||||||| ||||||||||||||||    
T  14956473 tgcagcttatagcacaatcgcttatcatgataagcacttatgtataagc 14956425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 34236064 - 34236148
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatga-aaaaagataaaataaagttaaact 102  Q
    ||||||||||| || || || || |||||||| || |||||| ||||||||||| ||  | ||||||||||||||||||||||||    
T  34236064 tgcagcttataacacaaacggttatcatgataagcccttatggataagcaatttctacaacaaaaagataaaataaagttaaact 34236148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 4558737 - 4558835
Alignment:
Q  56 ttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttatg 155  Q
    |||||||||||| |||| ||| | ||||||||||||||||||||| ||| |||   ||| | ||| || ||||| |||||| |||| |||||||||||||    
T  4558737 ttatgtataagctatttctataataaaagataaaataaagttaaattat-tttcatatatgctataagctgtttccataagctatcctagagagcttatg 4558835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 13895969 - 13896032
Alignment:
Q  195 ttataagttacttgaattagcttatcaaaaacttat-taagctcattaaaataagttataagct 257  Q
    ||||||||||||||||||| ||||||||||||   | ||| ||||| |||||||||||||||||    
T  13895969 ttataagttacttgaattaacttatcaaaaacaactataaactcatgaaaataagttataagct 13896032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 900864 - 900749
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagtt 118  Q
    |||| ||||||||| || ||||| ||||||||  |||||||||| |||  |||| | |    |||||||||||||||||||  ||| ||||| ||||| |    
T  900864 tgcatcttatagcacaaacgcttatcatgataaacacttatgtaaaagtcatttgtgtagtgaaagataaaataaagttaa--tattttttgtataagct 900767  T
Q  119 attagttgttttcataag 136  Q
    || |||||||||||||||    
T  900766 ataagttgttttcataag 900749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 2699269 - 2699342
Alignment:
Q  80 aaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttat 154  Q
    |||| |||||||||||||||||||| |||   ||||||||||||  ||||| ||||| | |||||||||||||||    
T  2699269 aaaatataaaataaagttaaactat-tttcatataagttattagccgtttttataagttgtcatagagagcttat 2699342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 8216787 - 8216853
Alignment:
Q  24 cttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaa 90  Q
    |||||||||||| | ||| ||||||||  ||||||||||||||| |||| ||| | |||||||||||    
T  8216787 cttatagcataaacacttatcatgataaacacttatgtataagccatttatataacaaaagataaaa 8216853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 16211049 - 16210975
Alignment:
Q  24 cttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagtta 98  Q
    ||||||||| |||| ||| |||||||| ||||| |||||||||| |||| |||   ||| |||||||||||||||    
T  16211049 cttatagcacaagcacttatcatgatacgcactcatgtataagctatttctatagtaaatgataaaataaagtta 16210975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 285
Target Start/End: Original strand, 25019638 - 25019728
Alignment:
Q  196 tataagttacttgaattagcttatcaaaaacttat-taagctcattaaaataagttataagctggtgtaaaaatgagaattaccaaacaaa 285  Q
    |||||| |||||||||||| |||||| || || || ||||||||| |||| ||||||||| || || ||||||| | | ||||||||||||    
T  25019638 tataagctacttgaattagattatcataagctcatataagctcataaaaagaagttataatctcgtttaaaaataacagttaccaaacaaa 25019728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 27728139 - 27728062
Alignment:
Q  69 atttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagag 147  Q
    |||| ||| ||||||||||||||||||| ||||||| |||   ||||  ||||||||||||||||||| |||| |||||    
T  27728139 atttctataaaaaaagataaaataaagtcaaactat-tttcatataaagtattagttgttttcataagctatcctagag 27728062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 35453784 - 35453707
Alignment:
Q  25 ttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaacta 103  Q
    |||||||||||||||||||||| ||| | |||||| ||||| |  ||| ||  | ||||||||||||||||||||||||    
T  35453784 ttatagcataagcgcttgtcat-ataagtacttatatataatctgtttctacaacaaaagataaaataaagttaaacta 35453707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 40859885 - 40859831
Alignment:
Q  20 gcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaattttt 74  Q
    ||||||||||||| ||| |||| |||||||| || ||||||||||||| ||||||    
T  40859885 gcagcttatagcacaagtgcttatcatgataagcgcttatgtataagctattttt 40859831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 8407336 - 8407393
Alignment:
Q  43 tcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    ||||||||||| |||| |||||||  |||| ||||  |||||||||||||||||||||    
T  8407336 tcatgatatgcgcttacgtataagtcatttctatgccaaaagataaaataaagttaaa 8407393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 31315581 - 31315536
Alignment:
Q  59 tgtataagcaatttttatgaaaaaagataaaataaagttaaactat 104  Q
    ||||||||| |||||||| | ||||||||||||||||| |||||||    
T  31315581 tgtataagctatttttataataaaagataaaataaagtcaaactat 31315536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 31862456 - 31862532
Alignment:
Q  80 aaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttatgaa 157  Q
    ||||||||| ||||||| ||||||| | | | ||||| ||| || |||||||||||| |||| |||||||||||||||    
T  31862456 aaaagataatataaagtcaaactat-tctcgtataagctataagatgttttcataagttatcctagagagcttatgaa 31862532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 40637471 - 40637422
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagca 68  Q
    |||||||||||||||||| |||| |||| ||| |||||||| ||||||||    
T  40637471 tgcagcttatagcataagtgcttatcataataagcacttatttataagca 40637422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 13544113 - 13544193
Alignment:
Q  189 attaaattataagttacttgaattagcttatcaaaaacttat-taagctcattaaaataagttataagctggtgtaaaaat 268  Q
    ||||| ||||||||| ||||||||||||||||| |||||  | ||| |||||  ||||||| ||||| || ||||||||||    
T  13544113 attaagttataagtttcttgaattagcttatcacaaactactataaactcatacaaataagctataaactcgtgtaaaaat 13544193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 13680360 - 13680280
Alignment:
Q  189 attaaattataagttacttgaattagcttatcaaaaacttat-taagctcattaaaataagttataagctggtgtaaaaat 268  Q
    ||||| ||||||||| ||||||||||||||||| |||||  | ||| |||||  ||||||| ||||| || ||||||||||    
T  13680360 attaagttataagtttcttgaattagcttatcacaaactactataaactcatacaaataagctataaactcgtgtaaaaat 13680280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 40665331 - 40665465
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagtt 118  Q
    ||||||||||||||||||  ||| |||||||| |||||| |||| |||| |||||||| | | |||||||| |||| | ||| ||| |||||  ||||||    
T  40665331 tgcagcttatagcataagttcttatcatgataagcacttctgtacaagctatttttataatagaagataaactaaaataaaattat-ttttgtgtaagtt 40665429  T
Q  119 attagttgttttcataagatatcatagagagcttat 154  Q
    || || |||||||||||| |||| | ||||||||||    
T  40665430 ataagatgttttcataagttatcttggagagcttat 40665465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 43822590 - 43822505
Alignment:
Q  198 taagttacttgaattagcttatcaaaaacttat-taagctcattaaaataagttataagctggtgtaaaaatgagaattaccaaac 282  Q
    |||| ||||||||||||||||||||||||   | ||| ||||| |||||||| |||||||| |||||||||||| |||||||||||    
T  43822590 taagctacttgaattagcttatcaaaaaccactataatctcatgaaaataagctataagcttgtgtaaaaatgacaattaccaaac 43822505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 30574085 - 30574002
Alignment:
Q  14 taatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaa 99  Q
    |||| ||||||||||| |||||||  || |||||||| || ||||||||||||| |||| |||  |||||||||||||||||||||    
T  30574085 taatttgcagcttatatcataagcatttatcatgataagcgcttatgtataagctatttctat--aaaaagataaaataaagttaa 30574002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 49465838 - 49465751
Alignment:
Q  12 cttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaa 99  Q
    |||||| ||||| ||||||||||| | ||| |||||| |  | ||||||| ||||| |||||||| | ||||||||||||||||||||    
T  49465838 cttaatttgcagtttatagcataatcacttatcatgagaaacgcttatgtgtaagctatttttataacaaaagataaaataaagttaa 49465751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 32645807 - 32645721
Alignment:
Q  198 taagttacttgaattagcttatcaaaaacttattaagctcattaaaataagttataagctggtgtaaaaatgagaattaccaaacaa 284  Q
    |||| ||||||| ||| |||||||||| |    |||||||||||||||||  |||||||| |||||||||||| |||||| ||||||    
T  32645807 taagctacttgacttaacttatcaaaaccgctataagctcattaaaataaactataagctcgtgtaaaaatgacaattactaaacaa 32645721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 9279489 - 9279417
Alignment:
Q  23 gcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagt 96  Q
    ||||||||||||||||||| |||| ||| ||| |||||||||||  ||||||  ||||||||||| ||||||||    
T  9279489 gcttatagcataagcgcttatcat-ataagcatttatgtataagttattttttcgaaaaaagatacaataaagt 9279417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 157
Target Start/End: Complemental strand, 44061158 - 44061054
Alignment:
Q  52 gcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagct 151  Q
    |||||| ||||||||| |||| |||   |||||||||||||| |||||| | | ||||  ||||| ||| ||||||||||||| |||||| |||||| ||    
T  44061158 gcacttctgtataagctatttctatagcaaaagataaaataaggttaaattgt-ttttctataagctataagttgttttcatatgatatcttagagaact 44061060  T
Q  152 tatgaa 157  Q
    ||||||    
T  44061059 tatgaa 44061054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 1816536 - 1816619
Alignment:
Q  70 tttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttat 154  Q
    ||||||| | ||||||||||||||||| ||||| | ||||| ||||| ||| ||||||||||||||| |||  | ||||||||||    
T  1816536 tttttataataaaagataaaataaagtcaaactgt-ttttgtataagatataagttgttttcataagctatactggagagcttat 1816619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 12833883 - 12833935
Alignment:
Q  16 atatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagca 68  Q
    ||||||||||||||||||||| |||| |||| ||| |||||||| ||||||||    
T  12833883 atatgcagcttatagcataagtgcttatcataataagcacttatttataagca 12833935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 35127539 - 35127393
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagtt 118  Q
    ||||||||||| ||||||| ||| |||||||| |  |||||||||| || |||| ||| | |||||||| | |||||||||| | | ||||||||| | |    
T  35127539 tgcagcttataccataagctcttatcatgataagtgcttatgtataggctatttctataacaaaagatatactaaagttaaattgt-ttttgcatatgct 35127441  T
Q  119 attagttgttttcataagatatcatagagagcttatgaacatgtcata 166  Q
    || |  | ||||||||   |||| | |||||||||| |||||||||||    
T  35127440 ataaactattttcatacactatcttggagagcttataaacatgtcata 35127393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 2100231 - 2100177
Alignment:
Q  112 ataagttattagttgttttcataagatatcatagagagcttatgaacatgtcata 166  Q
    ||||| ||| ||||||||||||||| |||| | ||||||||| ||||||||||||    
T  2100231 ataagctataagttgttttcataagttatcttggagagcttaggaacatgtcata 2100177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 226
Target Start/End: Original strand, 20873211 - 20873241
Alignment:
Q  196 tataagttacttgaattagcttatcaaaaac 226  Q
    |||||||||||||||||||||||||||||||    
T  20873211 tataagttacttgaattagcttatcaaaaac 20873241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 2128382 - 2128338
Alignment:
Q  56 ttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||||||||||| |||| ||| | |||||||||||||||||||||    
T  2128382 ttatgtataagctatttctataacaaaagataaaataaagttaaa 2128338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 23808192 - 23808140
Alignment:
Q  46 tgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagtta 98  Q
    ||||| |||||||||||||||| |||||||| | || || |||||||||||||    
T  23808192 tgataggcacttatgtataagctatttttataacaataggtaaaataaagtta 23808140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 29520656 - 29520608
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagc 67  Q
    ||||||||||||||||| | ||| |||| ||| ||||||||||||||||    
T  29520656 tgcagcttatagcataaacacttatcataataagcacttatgtataagc 29520608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 31365450 - 31365402
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagc 67  Q
    |||||||||||||| ||| | || |||||||| ||||||||||||||||    
T  31365450 tgcagcttatagcacaagtgattatcatgataagcacttatgtataagc 31365402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 39567807 - 39567886
Alignment:
Q  21 cagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||||||| |||||||||||| |||||||| |||||| ||||||||  |||| ||| | |||||||||||||||||||||    
T  39567807 cagcttattgcataagcgcttatcatgataagcacttgtgtataagatatttctataacaaaagataaaataaagttaaa 39567886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 4026738 - 4026834
Alignment:
Q  38 gcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataa 135  Q
    |||| |||||||| |  ||||| ||||||| ||||||||   ||||||||||||||||||||| ||| |||||||||| |||| || |||||||||||    
T  4026738 gcttatcatgataagtgcttatctataagctatttttatagcaaaagataaaataaagttaaattat-ttttgcataaattataagctgttttcataa 4026834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 32757528 - 32757484
Alignment:
Q  122 agttgttttcataagatatcatagagagcttatgaacatgtcata 166  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||    
T  32757528 agttgttttcataagatatcatggagagcttatggacatgtcata 32757484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 41407193 - 41407241
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagc 67  Q
    |||||||||||||| |||||||| |||||||| ||||||||||||||||    
T  41407193 tgcagcttatagcacaagcgcttatcatgataagcacttatgtataagc 41407241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 42457854 - 42457987
Alignment:
Q  23 gcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttatta 122  Q
    |||||||||| |||||| | |||||||| ||| |||||||||| | |||| |||   ||||||||||||||||||||| | | |||||  |||| | |||    
T  42457854 gcttatagcacaagcgcctatcatgataagcatttatgtataatctatttctatagtaaaagataaaataaagttaaattgt-ttttgtttaagctctta 42457952  T
Q  123 gttgttttcataagatatcatagagagcttatgaa 157  Q
    | ||| |||||||| |||| |||||| | ||||||    
T  42457953 gctgtattcataagctatcttagagaacatatgaa 42457987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 5998833 - 5998753
Alignment:
Q  56 ttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatc 141  Q
    |||| ||||||| |||||||| | |||||||||||||||||||||||     || |||||||||| ||||||||||| ||| ||||    
T  5998833 ttatatataagctatttttataacaaaagataaaataaagttaaact-----tttcataagttataagttgttttcacaagctatc 5998753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 36863732 - 36863656
Alignment:
Q  80 aaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttatgaa 157  Q
    ||||||||||||||||| |||| || ||||  ||||||||| | ||||||||||||| |||| | |||||||||||||    
T  36863732 aaaagataaaataaagtcaaacaat-ttttatataagttataaattgttttcataagctatcttggagagcttatgaa 36863656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 5133710 - 5133809
Alignment:
Q  55 cttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttat 154  Q
    ||||||||||||| |||| ||| | |||||||||||||||| |||||| | ||||  ||||| ||| || |||||||| ||| ||||  |||||||||||    
T  5133710 cttatgtataagctatttctataacaaaagataaaataaagataaactgt-ttttatataagatataagctgttttcaaaagttatctaagagagcttat 5133808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 166
Target Start/End: Original strand, 10143110 - 10143220
Alignment:
Q  55 cttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttat 154  Q
    ||||||||||||  |||| ||| | |||||||||||| |||| ||||| | ||||  ||||| ||| |||| |||||||||| |||||| ||||| ||||    
T  10143110 cttatgtataagttatttctataacaaaagataaaattaagtcaaactgt-ttttatataagctataagtttttttcataagctatcatggagagtttat 10143208  T
Q  155 gaacatgtcata 166  Q
    | | ||||||||    
T  10143209 ggatatgtcata 10143220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 18962170 - 18962123
Alignment:
Q  55 cttatgtataagcaatttttatgaaaaaagataaaataaagttaaact 102  Q
    ||||||||| ||| |||||||| | |||||||||||||||||||||||    
T  18962170 cttatgtattagctatttttataacaaaagataaaataaagttaaact 18962123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 40909970 - 40909915
Alignment:
Q  203 tacttgaattagcttatcaaaaa-cttattaagctcattaaaataagttataagct 257  Q
    ||||||||||||||||||||||| | |  ||||||||| |||||||||||||||||    
T  40909970 tacttgaattagcttatcaaaaaacgttataagctcatgaaaataagttataagct 40909915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 3102631 - 3102728
Alignment:
Q  55 cttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagctta 153  Q
    ||||||||||||| ||||||||   |||| |||||||||||| ||||||| ||||  ||||  |||||| |||||||||||  |||||| |||| ||||    
T  3102631 cttatgtataagctatttttatagcaaaatataaaataaagtcaaactat-ttttatataatctattagctgttttcataatttatcatggagaactta 3102728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 9833050 - 9833132
Alignment:
Q  12 cttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaa 94  Q
    |||||| | |||||||||||||||||  || ||||||||  ||||||||||||| | ||||  || | |||||||||||||||    
T  9833050 cttaatttacagcttatagcataagcatttatcatgataaacacttatgtataatctatttccataacaaaagataaaataaa 9833132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 34101983 - 34102041
Alignment:
Q  83 agataaaataaagttaaactatattttgcataagttattagttgttttcataagatatc 141  Q
    |||||||||||||| ||||  | ||||| ||||||||||||||||||| ||||| ||||    
T  34101983 agataaaataaagtcaaacgtttttttgtataagttattagttgtttttataagctatc 34102041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 44984346 - 44984408
Alignment:
Q  196 tataagttacttgaattagcttatc-aaaaacttattaagctcattaaaataagttataagct 257  Q
    |||||| |||||||||||||||||| |||||| |  ||||||| | |||||||||||||||||    
T  44984346 tataagctacttgaattagcttatcaaaaaacgttataagctcgtgaaaataagttataagct 44984408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 5599228 - 5599179
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagca 68  Q
    |||||||||||||||||| |||| |||| ||| |||||||| ||||||||    
T  5599228 tgcagcttatagcataagtgcttatcataataagcacttatttataagca 5599179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 31063008 - 31062919
Alignment:
Q  196 tataagttacttgaattagcttatcaaaaacttat-taagctcattaaaataagttataagctggtgtaaaaatgagaattaccaaacaa 284  Q
    |||||| |||||||| |||||||||||||||   | ||||||| | ||||||||||||||||| || |||||| |  | |||||||||||    
T  31063008 tataagctacttgaaatagcttatcaaaaaccgctataagctcttgaaaataagttataagctcgtataaaaacggaagttaccaaacaa 31062919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 36114357 - 36114402
Alignment:
Q  55 cttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    ||||| ||| ||| |||||||||| |||||||||||||||||||||    
T  36114357 cttatatattagctatttttatgacaaaagataaaataaagttaaa 36114402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 5045288 - 5045248
Alignment:
Q  56 ttatgtataagcaatttttatgaaaaaagataaaataaagt 96  Q
    |||||||||||| |||||||| | |||||||||||||||||    
T  5045288 ttatgtataagctatttttataacaaaagataaaataaagt 5045248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 19608793 - 19608737
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaattttta 75  Q
    |||||||||||||| |||| | |  ||||||| |||||||||||||||| |||||||    
T  19608793 tgcagcttatagcacaagcacataccatgataagcacttatgtataagctattttta 19608737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 37292454 - 37292379
Alignment:
Q  80 aaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttatga 156  Q
    ||||||||||||||||| ||||||| |||   ||||| |||||||||||||| |||| |||| | ||||| ||||||    
T  37292454 aaaagataaaataaagtaaaactat-tttcatataagctattagttgttttcttaagctatcctggagagtttatga 37292379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 40672927 - 40672887
Alignment:
Q  56 ttatgtataagcaatttttatgaaaaaagataaaataaagt 96  Q
    |||||||||||  |||| |||||||||||||||||||||||    
T  40672927 ttatgtataagttatttctatgaaaaaagataaaataaagt 40672887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 32206181 - 32206107
Alignment:
Q  26 tatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||||||||||||||| |||||||| |||||||||| ||||| || | ||||| ||||||| |||||||||||||    
T  32206181 tatagcataagcgcttatcatgataagcacttatgtgtaagctatctctatgacaaaagatgaaataaagttaaa 32206107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 29296417 - 29296345
Alignment:
Q  63 taagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataag 136  Q
    ||||| |||| ||||||||||||||||||||||||||| ||| ||||| ||||| ||| |||||||||| ||||    
T  29296417 taagcgatttctatgaaaaaagataaaataaagttaaattat-ttttgtataaggtataagttgttttcttaag 29296345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 13907422 - 13907466
Alignment:
Q  122 agttgttttcataagatatcatagagagcttatgaacatgtcata 166  Q
    ||||||||||||||| |||| || |||||||||||||||||||||    
T  13907422 agttgttttcataagctatcctaaagagcttatgaacatgtcata 13907466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 18076088 - 18076136
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagc 67  Q
    |||||||||||||| |||||||| |||| ||| ||||||||||||||||    
T  18076088 tgcagcttatagcacaagcgcttatcataataagcacttatgtataagc 18076136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 1402942 - 1403032
Alignment:
Q  63 taagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttat 154  Q
    ||||| |||| ||| | ||||||||||||||||||||||||| |||   ||||| ||| | ||||||||||||| |||||| |||| |||||    
T  1402942 taagctatttctataacaaaagataaaataaagttaaactat-tttcatataagctataaattgttttcataagctatcatggagatcttat 1403032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 4163075 - 4163158
Alignment:
Q  17 tatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||||||||||||||| | || ||| ||||||||  ||||||   |||||| ||||||||  ||| ||||||||||||||||||    
T  4163075 tatgcagcttatagcacaggcacttatcatgataaacacttacacataagctatttttatagaaatagataaaataaagttaaa 4163158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 4224696 - 4224779
Alignment:
Q  17 tatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||||||||||||||| | || ||| ||||||||  ||||||   |||||| ||||||||  ||| ||||||||||||||||||    
T  4224696 tatgcagcttatagcacaggcacttatcatgataaacacttacacataagctatttttatagaaatagataaaataaagttaaa 4224779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 264268 - 264354
Alignment:
Q  14 taatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||| |||||||||||||| ||| |||| |||||||| |  ||||| ||||||| |||| ||    |||||||||||||||||||||    
T  264268 taatttgcagcttatagcacaagtgcttatcatgataagtgcttatatataagctatttctaaagcaaaagataaaataaagttaaa 264354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 2514640 - 2514720
Alignment:
Q  55 cttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataag 136  Q
    ||||||||||||| |||| ||| | ||||||||||||||||| |||||| |||||  || || ||| |||| ||||||||||    
T  2514640 cttatgtataagctatttctataataaaagataaaataaagtcaaacta-attttatatgagctataagttattttcataag 2514720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 34430608 - 34430656
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagc 67  Q
    |||||||||||||| ||| |||| |||||||| || |||||||||||||    
T  34430608 tgcagcttatagcacaagtgcttatcatgataggcgcttatgtataagc 34430656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 28776877 - 28776955
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagtt 97  Q
    ||||||||||||| ||||| ||| |||||||| |  ||||||||||||| ||||||||  |||||||||||||||||||    
T  28776877 tgcagcttatagcctaagcacttatcatgataagtgcttatgtataagctatttttattgaaaaagataaaataaagtt 28776955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 465856 - 465937
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    ||||| ||||| ||||||| | | |||||||| |||||||| ||||||| |||| ||||| |||||||||||||||||||||    
T  465856 tgcagtttataacataagctcatttcatgataagcacttatatataagctatttctatgacaaaagataaaataaagttaaa 465937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 42582814 - 42582895
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||||||||||||||||||| || |||| ||| || ||||||||||||| ||||  |||| ||||||| |||||||||||||    
T  42582814 tgcagcttatagcataagcgtttatcataataagcgcttatgtataagctatttccatgataaaagatgaaataaagttaaa 42582895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 9004885 - 9004814
Alignment:
Q  196 tataagttacttgaattagcttatcaaaaacttat-taagctcattaaaataagttataagctggtgtaaaa 266  Q
    |||||| ||||||||||||||||||||||||  || ||||||||| |||||||| |||||||| ||||||||    
T  9004885 tataagctacttgaattagcttatcaaaaaccgatataagctcatgaaaataagctataagctcgtgtaaaa 9004814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 6593195 - 6593338
Alignment:
Q  12 cttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgc 111  Q
    |||||| | ||||||||||||||| |  || || ||||| || ||||||||||| |||||| ||| | |||||||||||||||||||||   |||| ||     
T  6593195 cttaatttacagcttatagcataatcatttatcttgatacgcgcttatgtataaacaatttctataacaaaagataaaataaagttaaa--ttattctgt 6593292  T
Q  112 ataagttattagttgttttcataagatatcatagagagcttatgaa 157  Q
    ||| | ||| || |||||| ||||| || | |||||||||||||||    
T  6593293 ataggctataagctgttttgataagctaccttagagagcttatgaa 6593338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 42573954 - 42573880
Alignment:
Q  12 cttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagat 86  Q
    |||||| ||||||||||||| | ||||||| |||||||| || ||||||||||||| |||| ||| | |||||||    
T  42573954 cttaatttgcagcttatagcctgagcgcttatcatgataagcgcttatgtataagctatttctataacaaaagat 42573880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 39105366 - 39105419
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaattt 72  Q
    |||||||||||||||||| |||| |||||||| || ||||||||||||| ||||    
T  39105366 tgcagcttatagcataagtgcttatcatgataagcgcttatgtataagctattt 39105419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 1618987 - 1619047
Alignment:
Q  12 cttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaattt 72  Q
    |||||| ||| ||||||||||||||||||| | |||||| |||||| ||||||||| ||||    
T  1618987 cttaatttgctgcttatagcataagcgcttttgatgataagcacttttgtataagctattt 1619047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 10772053 - 10771993
Alignment:
Q  12 cttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaattt 72  Q
    |||||| |||||||||||||||||| |||| ||||||||  ||| ||||||||||| ||||    
T  10772053 cttaatttgcagcttatagcataagtgcttatcatgataaacacatatgtataagctattt 10771993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 7319187 - 7319141
Alignment:
Q  21 cagcttatagcataagcgcttgtcatgatatgcacttatgtataagc 67  Q
    |||||||||||| |||||||| |||||||| ||||||||| ||||||    
T  7319187 cagcttatagcacaagcgcttatcatgataagcacttatgcataagc 7319141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 11835191 - 11835260
Alignment:
Q  31 cataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    ||||| ||||| |||||||| |   |||||||||| | |||||||| | |||||||||||||||||||||    
T  11835191 cataaacgcttatcatgataagtgtttatgtataaaccatttttataacaaaagataaaataaagttaaa 11835260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 24030505 - 24030432
Alignment:
Q  84 gataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttatgaa 157  Q
    ||||||||||||||||| ||| ||||| ||| ||||| ||||||||| ||||| |||  |||| | ||||||||    
T  24030505 gataaaataaagttaaattattttttggatatgttataagttgtttttataagctatattagataacttatgaa 24030432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 32882783 - 32882698
Alignment:
Q  198 taagttacttgaattagcttatcaaaaa-cttattaagctcattaaaataagttataagctggtgtaaaaatgagaattaccaaac 282  Q
    |||| |||||||||||| |||||||||| | |  ||||||||  |||||||| |||||||| |||  ||||||| |||||||||||    
T  32882783 taagctacttgaattagtttatcaaaaaacattataagctcaaaaaaataagctataagctcgtgagaaaatgacaattaccaaac 32882698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 40864624 - 40864705
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    ||||||||||||||||||||| ||| |||| | |  ||||| |||| || ||||||||   | |||||||||||||||||||    
T  40864624 tgcagcttatagcataagcgcctgttatgaaaagtgcttatatataggctatttttatagcataagataaaataaagttaaa 40864705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 166
Target Start/End: Original strand, 42646855 - 42646963
Alignment:
Q  57 tatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttatga 156  Q
    ||||||||||  |||||||| | ||| |||||||| |||||||| | | |||||  |||| ||| || |||||||||||   ||| | ||||||||||||    
T  42646855 tatgtataagatatttttataacaaaggataaaattaagttaaattgt-ttttgtttaagctataaggtgttttcataaacgatcttggagagcttatga 42646953  T
Q  157 acatgtcata 166  Q
    ||||||||||    
T  42646954 acatgtcata 42646963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 1465186 - 1465106
Alignment:
Q  20 gcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||| |||||||||||| |||| ||| |||| || ||||||||||||| |||| |||   | | |||||||||||||||||    
T  1465186 gcagtttatagcataagtgcttatcaagataagcgcttatgtataagctatttctatagcataggataaaataaagttaaa 1465106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 2568625 - 2568697
Alignment:
Q  85 ataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttatgaa 157  Q
    |||||| ||||||||| | | ||| | ||||| ||| ||||||||||||||| |||||| ||||||| |||||    
T  2568625 ataaaacaaagttaaattgtttttcgtataagctataagttgttttcataagctatcatggagagctaatgaa 2568697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 5963457 - 5963369
Alignment:
Q  12 cttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    |||||| ||||  |||||||||||||  || |||||||| || |||||||| || | |||| ||| |  ||||||||||||||||||||    
T  5963457 cttaatttgcaatttatagcataagcatttatcatgataagcgcttatgtacaaactatttctataatgaaagataaaataaagttaaa 5963369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 7612354 - 7612445
Alignment:
Q  12 cttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaattttta-tgaaaaaagataaaataaagttaaact 102  Q
    |||||| ||||||||||||||||||| ||| |||||||| || | ||||||||||| ||||| | | |||||||||| ||| ||||||||||    
T  7612354 cttaatttgcagcttatagcataagcacttatcatgataagctcatatgtataagctattttaattaaaaaaagatataattaagttaaact 7612445  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 42656420 - 42656494
Alignment:
Q  22 agcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagt 96  Q
    |||||||||||||||||||| |||  ||| |||||||| ||||||| |||| ||| | |||||||||||||||||    
T  42656420 agcttatagcataagcgcttatcaaaataagcacttatatataagctatttctataacaaaagataaaataaagt 42656494  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 21568806 - 21568758
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagc 67  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||||||    
T  21568806 tgcagcttatagcataagtgcttatcatgataagcacttatgtataagc 21568758  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 883798 - 883731
Alignment:
Q  203 tacttgaattagcttatcaaaaacttat-taagctcattaaaataagttataagctggtgtaaaaatg 269  Q
    ||||||||||| ||||||| |||||| | || |||||| ||||||||||||||||| |||||||||||    
T  883798 tacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagctcgtgtaaaaatg 883731  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 1243127 - 1243060
Alignment:
Q  203 tacttgaattagcttatcaaaaacttat-taagctcattaaaataagttataagctggtgtaaaaatg 269  Q
    ||||||||||| ||||||| |||||| | || |||||| ||||||||||||||||| |||||||||||    
T  1243127 tacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagctcgtgtaaaaatg 1243060  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 18350783 - 18350733
Alignment:
Q  112 ataagttattagttgttttcataagatatcatagagagcttatgaacatgt 162  Q
    ||||||||| || |||||||||||| |||||| ||||||||||||||||||    
T  18350783 ataagttataagctgttttcataagctatcatggagagcttatgaacatgt 18350733  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 47795859 - 47795905
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataa 65  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||    
T  47795859 tgcagcttatagcataagcgcttatcatgataaccacttatgtataa 47795905  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 28613665 - 28613594
Alignment:
Q  56 ttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgtt 128  Q
    |||||||||||| |||||||| | ||||||||||| ||||||||| | | ||||| ||||||||| |||||||    
T  28613665 ttatgtataagctatttttataacaaaagataaaacaaagttaaattgt-ttttgtataagttataagttgtt 28613594  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 5628698 - 5628597
Alignment:
Q  55 cttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttat 154  Q
    |||||| |||||| |||||||| | ||| ||||||||| |||| |||| | |||    |||| ||| || |||||||||||||||||| |||||||||||    
T  5628698 cttatgcataagctatttttataacaaatgataaaatagagttgaactgt-tttcatttaagatataagctgttttcataagatatcacagagagcttat 5628600  T
Q  155 gaa 157  Q
    |||    
T  5628599 gaa 5628597  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 283
Target Start/End: Complemental strand, 25659513 - 25659419
Alignment:
Q  190 ttaaattataagttacttgaattagcttatc-aaaaacttattaagctcattaaaataagttataagctggtgtaaaaatgagaattaccaaaca 283  Q
    ||||| |||||| |||||||||||||||||| |||| | |  ||||||||| |||||||| |||||| | || ||||||||| | || |||||||    
T  25659513 ttaaactataagctacttgaattagcttatcgaaaaccattgtaagctcatgaaaataagctataagtttgtctaaaaatgaaagttgccaaaca 25659419  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 283
Target Start/End: Original strand, 44235500 - 44235594
Alignment:
Q  190 ttaaattataagttacttgaattagcttatcaaaaacttat-taagctcattaaaataagttataagctggtgtaaaaatgagaattaccaaaca 283  Q
    |||| ||||| ||||||||||||| |||||||||||    | |||||||||||||||||| ||||||||  ||  ||| ||| ||||||||||||    
T  44235500 ttaatttatatgttacttgaattaacttatcaaaaaacactataagctcattaaaataagctataagctcttgagaaagtgacaattaccaaaca 44235594  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 29574733 - 29574692
Alignment:
Q  55 cttatgtataagcaatttttatgaaaaaagataaaataaagt 96  Q
    ||||||||||||| |||||||||| ||||||| |||||||||    
T  29574733 cttatgtataagctatttttatgacaaaagatgaaataaagt 29574692  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 44777150 - 44777034
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaactatattttgcataagtt 118  Q
    |||||||||||||||||| | || |||||||| ||||||||| |||| | |||| |||   |||||||||| ||||  |||||| | ||| | | ||| |    
T  44777150 tgcagcttatagcataagtgtttatcatgataagcacttatgcataaactatttctattgcaaaagataaattaaaaataaactgt-tttcggacaagct 44777052  T
Q  119 attagttgttttcataag 136  Q
    || |||||||||||||||    
T  44777051 ataagttgttttcataag 44777034  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 7513572 - 7513612
Alignment:
Q  55 cttatgtataagcaatttttatgaaaaaagataaaataaag 95  Q
    ||||||||||||| ||||||| || ||||||||||||||||    
T  7513572 cttatgtataagctatttttaagacaaaagataaaataaag 7513612  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 45806655 - 45806607
Alignment:
Q  19 tgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagc 67  Q
    |||||||||||||| |||| ||| |||| ||| ||||||||||||||||    
T  45806655 tgcagcttatagcaaaagcacttatcataataagcacttatgtataagc 45806607  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 47510007 - 47510087
Alignment:
Q  13 ttaatatgcagcttatagcataagcgcttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataa 93  Q
    ||||| || ||||||| || |||| |||| |||||||| |  ||||| |||||||||||||||| | | ||||||||||||    
T  47510007 ttaatttgtagcttattgcctaagtgcttatcatgataagggcttatatataagcaatttttataacataagataaaataa 47510087  T

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Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 21421 - 21365
Alignment:
Q  44 catgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 100  Q
    ||||||| |||||||||||||||| ||||||||   |||||||||||||||||||||    
T  21421 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaa 21365  T

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Target: scaffold0590 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 1206 - 1157
Alignment:
Q  55 cttatgtataagcaatttttatgaaaaaagataaaataaagttaaactat 104  Q
    ||||||||||||| |||| ||| | ||||||||||||||||| |||||||    
T  1206 cttatgtataagctatttctataacaaaagataaaataaagtcaaactat 1157  T

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Target: scaffold0275 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 2769 - 2818
Alignment:
Q  55 cttatgtataagcaatttttatgaaaaaagataaaataaagttaaactat 104  Q
    ||||||||||||| |||| ||| | ||||||||||||||||| |||||||    
T  2769 cttatgtataagctatttctataacaaaagataaaataaagtcaaactat 2818  T

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