View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10382_low_13 (Length: 351)
Name: NF10382_low_13
Description: NF10382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10382_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 33721324 - 33721002
Alignment:
| Q |
19 |
atggaagtcacctcaaaacatgaagaacgaagccttgaatagtggtcatgtcctgagaaatttcgtgccccaatttgcagttcgtacacagcaggaattg |
118 |
Q |
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| T |
33721324 |
atggaagtcacctcaaaacatgaagaacgaagccttgaatagtggtcatgtcctgagaaatttcgtgccccgatttgcagttcgtacacagtaggaattg |
33721225 |
T |
|
| Q |
119 |
accgttatccacaaaattgtgctccgattttatacattcatgctccgatttttgtcgtataaaaactcccaaaacaatgattcctatcataattctatta |
218 |
Q |
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| T |
33721224 |
accgttatccacaagattgtgctccgattttatacattcatgccccgatttttgtcttataaaaactcccacagcaatgattcctatcataattctatta |
33721125 |
T |
|
| Q |
219 |
atttatcaaagattgctactccatatactttcatttctatgctaatctatagcactaattagaggaagaaagctggttagctgagaaactagagttgaga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33721124 |
atttatcaaagattgctactccatatactttcatttctatgctaatctatagcactaattagaggaagaaagctggttagctgagaaactagagttgaga |
33721025 |
T |
|
| Q |
319 |
gacaacattacactatatctctg |
341 |
Q |
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||||||||||||||||||||||| |
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| T |
33721024 |
gacaacattacactatatctctg |
33721002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 21219634 - 21219536
Alignment:
| Q |
188 |
caaaacaatgattcctatcataattctattaatttatcaaagattgctac--tccatatactttcatttctatgctaatctatagcactaattagagga |
284 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| | ||||||||||| |||||||||||||| ||||||||||| |
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| T |
21219634 |
caaaacaataattcctatcataattctattactttatcaaagattgctacaaagcatacattttcatttctaggctaatctatagcaataattagagga |
21219536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 24944914 - 24944790
Alignment:
| Q |
23 |
aagtcacctcaaaacatgaagaacgaagccttgaatagtggtcatgtcctgagaaatttcgtgccccaatttgcagttcgtacacagcaggaattgaccg |
122 |
Q |
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||||||||||| |||||||||| |||||||||||||| || | || ||| || |||||| ||||||| | || ||| |||||||| | ||||||||| |
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| T |
24944914 |
aagtcacctcacaacatgaagagcgaagccttgaataatgcttatatcccgaaaaattttgtgccccgaactgttgtttgtacacagtacgaattgacct |
24944815 |
T |
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| Q |
123 |
ttatccacaaaattgtgctccgatt |
147 |
Q |
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||||||||||||| ||||||||||| |
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| T |
24944814 |
ttatccacaaaatcgtgctccgatt |
24944790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 21657497 - 21657533
Alignment:
| Q |
197 |
gattcctatcataattctattaatttatcaaagattg |
233 |
Q |
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||||||||||| |||||||||| |||||||||||||| |
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| T |
21657497 |
gattcctatcacaattctattattttatcaaagattg |
21657533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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