View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10382_low_18 (Length: 307)
Name: NF10382_low_18
Description: NF10382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10382_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 40105906 - 40106211
Alignment:
| Q |
16 |
tgaaggttagggaaagagttgttaacaatatgcatagtagaagaacctgcacccctc--------------attcatcactcagcagtgtgatatcacca |
101 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40105906 |
tgaaggttagggaaagagctgttaacaatatgcatagtagaagaacctgcacccctcattcatcactcctcattcatcactcagcagtgtgatatcacca |
40106005 |
T |
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| Q |
102 |
tgttttatctcaaaatcttgactgtggtgtgtcacgcccgagtctccagcatgtatagccttagactcaacccgtagatgtcactctaatcaagnnnnnn |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40106006 |
tgttttatctcaaaatcttgactgtggtgtgtcacgcctgagtctccagcatgtatagccttagactcaacccgtagatgtcactctaatcaagaaaaga |
40106105 |
T |
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| Q |
202 |
nnnnnnnnnnnnnnnntattagccgcatagtcgaacacctaagttataacatcaaagttcgtacaactacaataattacttaccaatttcttcttcactg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40106106 |
aaaagtaaaaagtaaatattagccgcatagtcgaacacctaagttataacatcaaagttcacacaactacaataattacttaccaatttcttcttcactg |
40106205 |
T |
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| Q |
302 |
ttttct |
307 |
Q |
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|||||| |
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| T |
40106206 |
ttttct |
40106211 |
T |
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