View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10382_low_23 (Length: 250)
Name: NF10382_low_23
Description: NF10382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10382_low_23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 11532445 - 11532201
Alignment:
| Q |
6 |
aggagcacagaaaacatctgaaattcgaacattcctagtacctgagagcatagcaatgcaatcatcgccggttccaatgttcacacttgaaatatttatt |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11532445 |
aggaccacaaaaaacatctgaaattcgaacattcctagtacctgagagcatagcaatgcaatcatcgccggttccaatgttcacacttgaaatatttatt |
11532346 |
T |
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| Q |
106 |
ctctttgacatccctattttaataccatctgtgttggggctatctttgggggctgttattttcagtcctctaagtaacatgttttcacatccaaataaca |
205 |
Q |
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| T |
11532345 |
ccctttgacatccctattttaataccatctgtgttggggctatctttgggggctgttattttcagtcctctaagtaacatgttttcacatccaaataaca |
11532246 |
T |
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| Q |
206 |
caaaatgactttgtttgctatcgatagaatgcatgtcatggacat |
250 |
Q |
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| T |
11532245 |
caaaatgactttgtttgctatcgatagaatgcatgtcatggacat |
11532201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 26886079 - 26885989
Alignment:
| Q |
16 |
aaaacatctgaaattcgaacattcctagtacctgagagcatagcaatgcaatcatcgccggttccaatgttcacacttgaaatatttattc |
106 |
Q |
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| T |
26886079 |
aaaacatttaaaattcgaacattcctagtacctgagagcatagtaatgcaatgatcaccaatttcaatgttcacatttgttatatttattc |
26885989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 26884376 - 26884323
Alignment:
| Q |
11 |
cacagaaaacatctgaaattcgaacattcctagtacctgagagcatagcaatgc |
64 |
Q |
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| T |
26884376 |
cacaaaaaacatttgaaattcgaacattcgtagtacttgagagcatagtaatgc |
26884323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 26883676 - 26883623
Alignment:
| Q |
11 |
cacagaaaacatctgaaattcgaacattcctagtacctgagagcatagcaatgc |
64 |
Q |
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| T |
26883676 |
cacaaaaaatatttgaaattcgaacattcgtagtacttgagagcatagtaatgc |
26883623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 239
Target Start/End: Complemental strand, 26301521 - 26301331
Alignment:
| Q |
49 |
gagagcatagcaatgcaatcatcgccggttccaatgttcacacttgaaatatttattctctttgacatccctattttaataccatctgtgttggggctat |
148 |
Q |
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|||||||||| |||||| |||| ||| |||| |||||| ||||||| |||||||| | | ||||| | |||||||| || ||||||||||||||||| | |
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| T |
26301521 |
gagagcatagaaatgcagtcattgcccgttctaatgttaacacttgtgatatttatacccgttgactttcctattttgatgccatctgtgttggggctgt |
26301422 |
T |
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| Q |
149 |
ctttgggggctgttattttcagtcctctaagtaacatgttttcacatccaaataacacaaaatgactttgtttgctatcgatagaatgcat |
239 |
Q |
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| T |
26301421 |
caccgggggcttttatttgtagttttgtgagtgtcatgttgttacatctatacaacccaaaatgactttgcttgctgttgaaagaatgcat |
26301331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 49616800 - 49616740
Alignment:
| Q |
34 |
acattcctagtacctgagagcatagcaatgcaatcatcgccggttccaatgttcacacttg |
94 |
Q |
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| T |
49616800 |
acattcccagtaccagagatcatagcaatgcaatcatcaccagttgcaatgttcacacttg |
49616740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 13013090 - 13012974
Alignment:
| Q |
33 |
aacattcctagtacctgagagcatagcaatgcaatcatcgccggttccaatgttcacacttgaaatatttattctctttgacatccctattttaatacca |
132 |
Q |
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| T |
13013090 |
aacattcctagtaccagagaccattgcaatacaatcatcaccggtgccgatgctcgcacttttaatagttatcccgtttgatttgcctatttttattcca |
13012991 |
T |
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| Q |
133 |
tctgtgttggggctatc |
149 |
Q |
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| T |
13012990 |
tctgtgtttgggctatc |
13012974 |
T |
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