View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10382_low_25 (Length: 242)
Name: NF10382_low_25
Description: NF10382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10382_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 5128495 - 5128314
Alignment:
| Q |
1 |
tttttactcaattaattagagtagttgaaagtagattgtggaattcaaattttgtttttgtcttaaacttctggtttccaacggggtaatttgaagttcg |
100 |
Q |
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| T |
5128495 |
tttttactcaattaattagagtagttgaaagtagattgtggaattcaaattttgtttttgtcttaaacttctggtttccaacggggtaatttgaagttcg |
5128396 |
T |
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| Q |
101 |
gttaggtggtaaagtcggacaaagtatagtaaaataatgtgtgtagcgtaaattagagtggttgattatagtgtgcgggaaa |
182 |
Q |
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| T |
5128395 |
gttaggtggtaaagtcggacaaagtatagtaaaataatgtgtgtagcgtaaattagagtggttgattatagtgtgcgggaaa |
5128314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 5127489 - 5127449
Alignment:
| Q |
187 |
ataacttgttggttgatgtcaacaatttaatccgatatttg |
227 |
Q |
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| T |
5127489 |
ataacttgttggttgatgtcaacaatttaatccgatatttg |
5127449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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