View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10382_low_29 (Length: 239)
Name: NF10382_low_29
Description: NF10382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10382_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40106383 - 40106607
Alignment:
| Q |
1 |
cctgcaagctcgggtaagatatacttttgggcaatcttacccaagtttgaaaatgataaaagcaaattaactctcaagaaaacaacaatccaatcataaa |
100 |
Q |
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| T |
40106383 |
cctgcaagctcgggtaagatatacttttgggcaatcttacccaagtttgaaaatgataaaagcaaattaactctcaagaaaacaacaatccaatcataaa |
40106482 |
T |
|
| Q |
101 |
attctacaagatgtgataaccagttatgcataaaagatagc---nnnnnnnntgtataaataaaataatataattaacagcggagattcacccttctaaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40106483 |
attctacaagatgtgataaccagttatgcataaaagatagcaaaaaaaaaaatgtataaataaaataatataattaacagcggagattcacccttctaaa |
40106582 |
T |
|
| Q |
198 |
tctgtaatgaaaccctccaccccgc |
222 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
40106583 |
tctgtaatgaaaccctccaccccgc |
40106607 |
T |
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