View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10382_low_3 (Length: 555)
Name: NF10382_low_3
Description: NF10382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10382_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 285 - 537
Target Start/End: Original strand, 30191319 - 30191571
Alignment:
| Q |
285 |
ctctttgtttgattgctgccacagcattcactgcagagtatcttctctttaactttcactcagcaactcacaaaggcctagaaggctattatcatgtcct |
384 |
Q |
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| T |
30191319 |
ctctttgtttgattgctgccacagcattcactgcagagtatcttctctttaactttcactcagcaactcacaaaggcctagaaggctattatcatgtcct |
30191418 |
T |
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| Q |
385 |
cctcgccttcctgattggtctttgtattttatcttcaattgccggagccgttttaccaacatgtttcccagtcgatttatgtaagggcattggcataaca |
484 |
Q |
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| T |
30191419 |
cctcgccttcctgattggtctttgtattttatcttcaattgccggagccgttttaccaacatgtttcccagtcgatttatctaagggcattggcataaca |
30191518 |
T |
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| Q |
485 |
ctgcaaggaatctggttctatcagacagcttttgttctctttggccccatgct |
537 |
Q |
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| T |
30191519 |
ctgcaaggaatctggttctatcagacagcttttgttctctttggccccatgct |
30191571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 303 - 524
Target Start/End: Original strand, 30186539 - 30186760
Alignment:
| Q |
303 |
ccacagcattcactgcagagtatcttctctttaactttcactcagcaactcacaaaggcctagaaggctattatcatgtcctcctcgccttcctgattgg |
402 |
Q |
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| T |
30186539 |
ccacagcattcagtacagagtatattttattttactatcactcaacaacacacataggtctagaaggctattatcatatcctccttggctttctggttcg |
30186638 |
T |
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| Q |
403 |
tctttgtattttatcttcaattgccggagccgttttaccaacatgtttcccagtcgatttatgtaagggcattggcataacactgcaaggaatctggttc |
502 |
Q |
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| T |
30186639 |
tctttgcattttatctacaattgccggagcacttctcccgaccagttttccggtagatttatgtagtagcatcaccataacgctacaaggaatctggtta |
30186738 |
T |
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| Q |
503 |
tatcagacagcttttgttctct |
524 |
Q |
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| T |
30186739 |
tatcagacagcctttgttctct |
30186760 |
T |
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